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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OEKT] metagenome; 1998
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181184840
OEKT01000221
[OEKT] metagenome; 1998
113
37
-
Pro
TGG
[ENA]
¢þ
>WENV181184846
OEKT01000614
[OEKT] metagenome; 1998
119
46
-
Gln
TTG
[ENA]
¢þ
>WENV181184833
OEKT01000035
[OEKT] metagenome; 1998
263
336
+
Asp
GTC
[ENA]
¢þ
>WENV181184835
OEKT01000135
[OEKT] metagenome; 1998
357
281
-
Pro
CGG
[ENA]
¢þ
>WENV181184839
OEKT01000221
[OEKT] metagenome; 1998
795
868
+
Glu
CTC
[ENA]
¢þ
>WENV181184838
OEKT01000172
[OEKT] metagenome; 1998
952
1024
+
Phe
GAA
[ENA]
¢þ
>WENV181184841
OEKT01000235
[OEKT] metagenome; 1998
1182
1099
-
Leu
CAA
[ENA]
¢þ
>WENV181184837
OEKT01000148
[OEKT] metagenome; 1998
1213
1124
-
Ser
CGA
[ENA]
¢þ
>WENV181184845
OEKT01000563
[OEKT] metagenome; 1998
1411
1337
-
Lys
TTT
[ENA]
¢þ
>WENV181184831
OEKT01000021
[OEKT] metagenome; 1998
1579
1653
+
Val
CAC
[ENA]
¢þ
>WENV181184843
OEKT01000388
[OEKT] metagenome; 1998
2079
2004
-
Asp
GTC
[ENA]
¢þ
>WENV181184847
OEKT01000718
[OEKT] metagenome; 1998
2773
2846
+
Met
CAT
[ENA]
¢þ
>WENV181184832
OEKT01000025
[OEKT] metagenome; 1998
3083
3170
+
Ser
TGA
[ENA]
¢þ
>WENV181184842
OEKT01000289
[OEKT] metagenome; 1998
4185
4259
+
Arg
ACG
[ENA]
¢þ
>WENV181184836
OEKT01000145
[OEKT] metagenome; 1998
4415
4489
+
Thr
TGT
[ENA]
¢þ
>WENV181184844
OEKT01000453
[OEKT] metagenome; 1998
6046
6131
+
Ser
GGA
[ENA]
¢þ
>WENV181184834
OEKT01000049
[OEKT] metagenome; 1998
6055
6138
+
Leu
CAG
[ENA]
¢þ
>WENV181184830
OEKT01000019
[OEKT] metagenome; 1998
6821
6732
-
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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