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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OEKY] metagenome; 1998
HIT:
24 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181184951
OEKY01000605
[OEKY] metagenome; 1998
77
1
-
Arg
CCT
[ENA]
¢þ
>WENV181184942
OEKY01000166
[OEKY] metagenome; 1998
116
40
-
Arg
CCG
[ENA]
¢þ
>WENV181184941
OEKY01000166
[OEKY] metagenome; 1998
216
140
-
His
GTG
[ENA]
¢þ
>WENV181184946
OEKY01000322
[OEKY] metagenome; 1998
259
182
-
Asp
GTC
[ENA]
¢þ
>WENV181184949
OEKY01000555
[OEKY] metagenome; 1998
668
582
-
Leu
CAG
[ENA]
¢þ
>WENV181184959
OEKY01000891
[OEKY] metagenome; 1998
991
1065
+
Val
GAC
[ENA]
¢þ
>WENV181184940
OEKY01000153
[OEKY] metagenome; 1998
1185
1109
-
Pro
TGG
[ENA]
¢þ
>WENV181184955
OEKY01000691
[OEKY] metagenome; 1998
1310
1384
+
Gly
CCC
[ENA]
¢þ
>WENV181184936
OEKY01000017
[OEKY] metagenome; 1998
1387
1312
-
Ile2
CAT
[ENA]
¢þ
>WENV181184939
OEKY01000132
[OEKY] metagenome; 1998
1394
1319
-
Met
CAT
[ENA]
¢þ
>WENV181184945
OEKY01000311
[OEKY] metagenome; 1998
1517
1593
+
Pro
CGG
[ENA]
¢þ
>WENV181184956
OEKY01000754
[OEKY] metagenome; 1998
1794
1868
+
Gly
GCC
[ENA]
¢þ
>WENV181184957
OEKY01000754
[OEKY] metagenome; 1998
1889
1964
+
Cys
GCA
[ENA]
¢þ
>WENV181184937
OEKY01000089
[OEKY] metagenome; 1998
2763
2837
+
Thr
CGT
[ENA]
¢þ
>WENV181184948
OEKY01000528
[OEKY] metagenome; 1998
2886
2959
+
Gln
TTG
[ENA]
¢þ
>WENV181184947
OEKY01000341
[OEKY] metagenome; 1998
3214
3139
-
Ala
CGC
[ENA]
¢þ
>WENV181184950
OEKY01000600
[OEKY] metagenome; 1998
3703
3779
+
Pro
GGG
[ENA]
¢þ
>WENV181184954
OEKY01000630
[OEKY] metagenome; 1998
4357
4283
-
Asn
GTT
[ENA]
¢þ
>WENV181184938
OEKY01000107
[OEKY] metagenome; 1998
8240
8156
-
Leu
TAG
[ENA]
¢þ
>WENV181184944
OEKY01000256
[OEKY] metagenome; 1998
8671
8768
+
SeC
TCA
[ENA]
¢þ
>WENV181184943
OEKY01000178
[OEKY] metagenome; 1998
12560
12635
+
Phe
GAA
[ENA]
¢þ
>WENV181184958
OEKY01000801
[OEKY] metagenome; 1998
21142
21067
-
Lys
CTT
[ENA]
¢þ
>WENV181184953
OEKY01000609
[OEKY] metagenome; 1998
21478
21403
-
Ala
GGC
[ENA]
¢þ
>WENV181184952
OEKY01000609
[OEKY] metagenome; 1998
22164
22250
+
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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