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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OELA] metagenome; 1998
HIT:
60 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181185012
OELA01000093
[OELA] metagenome; 1998
5
77
+
Lys
CTT
[ENA]
¢þ
>WENV181185022
OELA01000245
[OELA] metagenome; 1998
54
129
+
Ala
TGC
[ENA]
¢þ
>WENV181185034
OELA01000321
[OELA] metagenome; 1998
90
165
+
Ala
TGC
[ENA]
¢þ
>WENV181185005
OELA01000051
[OELA] metagenome; 1998
91
2
-
Ser
TGA
[ENA]
¢þ
>WENV181185056
OELA01000538
[OELA] metagenome; 1998
93
168
+
Ala
TGC
[ENA]
¢þ
>WENV181185053
OELA01000503
[OELA] metagenome; 1998
103
178
+
Ala
TGC
[ENA]
¢þ
>WENV181185006
OELA01000057
[OELA] metagenome; 1998
122
197
+
Ala
TGC
[ENA]
¢þ
>WENV181185047
OELA01000419
[OELA] metagenome; 1998
178
103
-
Trp
CCA
[ENA]
¢þ
>WENV181185028
OELA01000281
[OELA] metagenome; 1998
299
375
+
Ile
GAT
[ENA]
¢þ
>WENV181185054
OELA01000515
[OELA] metagenome; 1998
349
425
+
Ile
GAT
[ENA]
¢þ
>WENV181185001
OELA01000026
[OELA] metagenome; 1998
399
473
+
Trp
CCA
[ENA]
¢þ
>WENV181185043
OELA01000407
[OELA] metagenome; 1998
423
498
+
Ile
GAT
[ENA]
¢þ
>WENV181185023
OELA01000247
[OELA] metagenome; 1998
493
418
-
Met
CAT
[ENA]
¢þ
>WENV181185029
OELA01000281
[OELA] metagenome; 1998
506
581
+
Ala
TGC
[ENA]
¢þ
>WENV181185044
OELA01000407
[OELA] metagenome; 1998
525
599
+
Ala
TGC
[ENA]
¢þ
>WENV181185033
OELA01000318
[OELA] metagenome; 1998
527
452
-
Ala
TGC
[ENA]
¢þ
>WENV181185011
OELA01000085
[OELA] metagenome; 1998
538
462
-
Ile
GAT
[ENA]
¢þ
>WENV181185055
OELA01000515
[OELA] metagenome; 1998
560
635
+
Ala
TGC
[ENA]
¢þ
>WENV181185000
OELA01000005
[OELA] metagenome; 1998
614
539
-
Ala
TGC
[ENA]
¢þ
>WENV181185031
OELA01000307
[OELA] metagenome; 1998
633
707
+
Gly
GCC
[ENA]
¢þ
>WENV181185010
OELA01000085
[OELA] metagenome; 1998
637
562
-
Ala
TGC
[ENA]
¢þ
>WENV181184999
OELA01000005
[OELA] metagenome; 1998
705
629
-
Ile
GAT
[ENA]
¢þ
>WENV181185052
OELA01000475
[OELA] metagenome; 1998
859
784
-
Ala
TGC
[ENA]
¢þ
>WENV181185049
OELA01000463
[OELA] metagenome; 1998
914
839
-
Ala
TGC
[ENA]
¢þ
>WENV181185051
OELA01000475
[OELA] metagenome; 1998
1018
942
-
Ile
GAT
[ENA]
¢þ
>WENV181185048
OELA01000463
[OELA] metagenome; 1998
1018
942
-
Ile
GAT
[ENA]
¢þ
>WENV181185007
OELA01000061
[OELA] metagenome; 1998
1334
1411
+
Glu
TTC
[ENA]
¢þ
>WENV181185017
OELA01000220
[OELA] metagenome; 1998
1500
1589
+
Ser
CGA
[ENA]
¢þ
>WENV181185014
OELA01000121
[OELA] metagenome; 1998
1587
1511
-
Pro
TGG
[ENA]
¢þ
>WENV181185046
OELA01000410
[OELA] metagenome; 1998
2146
2071
-
Ala
GGC
[ENA]
¢þ
>WENV181185035
OELA01000351
[OELA] metagenome; 1998
2172
2256
+
Tyr
GTA
[ENA]
¢þ
>WENV181185030
OELA01000304
[OELA] metagenome; 1998
2342
2416
+
Val
GAC
[ENA]
¢þ
>WENV181185036
OELA01000351
[OELA] metagenome; 1998
2345
2419
+
Gly
TCC
[ENA]
¢þ
>WENV181185037
OELA01000351
[OELA] metagenome; 1998
2522
2597
+
Thr
GGT
[ENA]
¢þ
>WENV181185003
OELA01000038
[OELA] metagenome; 1998
2565
2490
-
Phe
GAA
[ENA]
¢þ
>WENV181185004
OELA01000048
[OELA] metagenome; 1998
3428
3353
-
Ala
CGC
[ENA]
¢þ
>WENV181185038
OELA01000366
[OELA] metagenome; 1998
3705
3789
+
Tyr
GTA
[ENA]
¢þ
>WENV181185039
OELA01000366
[OELA] metagenome; 1998
3874
3948
+
Gly
TCC
[ENA]
¢þ
>WENV181185002
OELA01000038
[OELA] metagenome; 1998
3930
3838
-
Ser
GCT
[ENA]
¢þ
>WENV181185045
OELA01000410
[OELA] metagenome; 1998
3994
4069
+
Lys
TTT
[ENA]
¢þ
>WENV181185040
OELA01000366
[OELA] metagenome; 1998
4059
4134
+
Thr
GGT
[ENA]
¢þ
>WENV181185050
OELA01000473
[OELA] metagenome; 1998
4284
4209
-
Cys
GCA
[ENA]
¢þ
>WENV181185027
OELA01000263
[OELA] metagenome; 1998
4317
4243
-
Val
CAC
[ENA]
¢þ
>WENV181185015
OELA01000193
[OELA] metagenome; 1998
4581
4656
+
Arg
TCG
[ENA]
¢þ
>WENV181185016
OELA01000214
[OELA] metagenome; 1998
4866
4790
-
Pro
CGG
[ENA]
¢þ
>WENV181185058
OELA01000584
[OELA] metagenome; 1998
5286
5210
-
Arg
CCT
[ENA]
¢þ
>WENV181185024
OELA01000260
[OELA] metagenome; 1998
6273
6191
-
Leu
TAG
[ENA]
¢þ
>WENV181185008
OELA01000074
[OELA] metagenome; 1998
7606
7682
+
Arg
TCT
[ENA]
¢þ
>WENV181185025
OELA01000261
[OELA] metagenome; 1998
8006
8081
+
Val
TAC
[ENA]
¢þ
>WENV181185026
OELA01000261
[OELA] metagenome; 1998
8204
8280
+
Asp
GTC
[ENA]
¢þ
>WENV181185009
OELA01000081
[OELA] metagenome; 1998
10331
10405
+
Thr
TGT
[ENA]
¢þ
>WENV181185041
OELA01000371
[OELA] metagenome; 1998
10674
10598
-
His
GTG
[ENA]
¢þ
>WENV181185057
OELA01000564
[OELA] metagenome; 1998
12126
12202
+
Ile2
CAT
[ENA]
¢þ
>WENV181185018
OELA01000231
[OELA] metagenome; 1998
14699
14773
+
Gly
CCC
[ENA]
¢þ
>WENV181185019
OELA01000242
[OELA] metagenome; 1998
27413
27486
+
Gln
CTG
[ENA]
¢þ
>WENV181185020
OELA01000242
[OELA] metagenome; 1998
27536
27609
+
Gln
TTG
[ENA]
¢þ
>WENV181185042
OELA01000391
[OELA] metagenome; 1998
28184
28101
-
Leu
GAG
[ENA]
¢þ
>WENV181185032
OELA01000314
[OELA] metagenome; 1998
30574
30660
+
Leu
CAA
[ENA]
¢þ
>WENV181185021
OELA01000242
[OELA] metagenome; 1998
33579
33656
+
Glu
CTC
[ENA]
¢þ
>WENV181185013
OELA01000115
[OELA] metagenome; 1998
34959
35034
+
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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