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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OELB] metagenome; 1998
HIT:
32 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181185065
OELB01000278
[OELB] metagenome; 1998
76
2
-
Val
CAC
[ENA]
¢þ
>WENV181185083
OELB01000731
[OELB] metagenome; 1998
81
5
-
Arg
ACG
[ENA]
¢þ
>WENV181185085
OELB01000761
[OELB] metagenome; 1998
103
15
-
Leu
TAA
[ENA]
¢þ
>WENV181185066
OELB01000299
[OELB] metagenome; 1998
143
70
-
Gln
TTG
[ENA]
¢þ
>WENV181185061
OELB01000037
[OELB] metagenome; 1998
242
166
-
Asp
GTC
[ENA]
¢þ
>WENV181185079
OELB01000634
[OELB] metagenome; 1998
278
352
+
Thr
TGT
[ENA]
¢þ
>WENV181185089
OELB01000952
[OELB] metagenome; 1998
367
291
-
Trp
CCA
[ENA]
¢þ
>WENV181185075
OELB01000558
[OELB] metagenome; 1998
460
534
+
Thr
CGT
[ENA]
¢þ
>WENV181185060
OELB01000030
[OELB] metagenome; 1998
1336
1261
-
Lys
TTT
[ENA]
¢þ
>WENV181185063
OELB01000244
[OELB] metagenome; 1998
1416
1342
-
Gly
GCC
[ENA]
¢þ
>WENV181185074
OELB01000549
[OELB] metagenome; 1998
1716
1789
+
Cys
GCA
[ENA]
¢þ
>WENV181185090
OELB01000994
[OELB] metagenome; 1998
1735
1659
-
Pro
GGG
[ENA]
¢þ
>WENV181185069
OELB01000370
[OELB] metagenome; 1998
1846
1942
+
SeC
TCA
[ENA]
¢þ
>WENV181185086
OELB01000768
[OELB] metagenome; 1998
1855
1780
-
Val
TAC
[ENA]
¢þ
>WENV181185068
OELB01000305
[OELB] metagenome; 1998
1869
1945
+
His
GTG
[ENA]
¢þ
>WENV181185080
OELB01000638
[OELB] metagenome; 1998
1969
1893
-
Pro
CGG
[ENA]
¢þ
>WENV181185088
OELB01000952
[OELB] metagenome; 1998
2107
2034
-
Gly
TCC
[ENA]
¢þ
>WENV181185087
OELB01000952
[OELB] metagenome; 1998
2228
2143
-
Tyr
GTA
[ENA]
¢þ
>WENV181185064
OELB01000276
[OELB] metagenome; 1998
2601
2694
+
Ser
GCT
[ENA]
¢þ
>WENV181185072
OELB01000511
[OELB] metagenome; 1998
3273
3199
-
Gly
CCC
[ENA]
¢þ
>WENV181185084
OELB01000754
[OELB] metagenome; 1998
3611
3536
-
Arg
TCT
[ENA]
¢þ
>WENV181185078
OELB01000623
[OELB] metagenome; 1998
4185
4101
-
Leu
TAG
[ENA]
¢þ
>WENV181185067
OELB01000304
[OELB] metagenome; 1998
5995
5919
-
Met
CAT
[ENA]
¢þ
>WENV181185081
OELB01000711
[OELB] metagenome; 1998
6084
5998
-
Leu
CAA
[ENA]
¢þ
>WENV181185077
OELB01000621
[OELB] metagenome; 1998
6743
6668
-
Ala
CGC
[ENA]
¢þ
>WENV181185071
OELB01000478
[OELB] metagenome; 1998
6917
7006
+
Ser
TGA
[ENA]
¢þ
>WENV181185076
OELB01000600
[OELB] metagenome; 1998
7742
7816
+
Met
CAT
[ENA]
¢þ
>WENV181185059
OELB01000005
[OELB] metagenome; 1998
7963
8039
+
Arg
CCG
[ENA]
¢þ
>WENV181185062
OELB01000162
[OELB] metagenome; 1998
8608
8533
-
Glu
TTC
[ENA]
¢þ
>WENV181185070
OELB01000401
[OELB] metagenome; 1998
10683
10609
-
Val
GAC
[ENA]
¢þ
>WENV181185073
OELB01000531
[OELB] metagenome; 1998
14047
13956
-
Ser
GGA
[ENA]
¢þ
>WENV181185082
OELB01000721
[OELB] metagenome; 1998
14795
14870
+
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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