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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OELK] metagenome; 1998
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181185390
OELK01000868
[OELK] metagenome; 1998
78
5
-
Thr
GGT
[ENA]
¢þ
>WENV181185401
OELK01001238
[OELK] metagenome; 1998
93
169
+
Ile
GAT
[ENA]
¢þ
>WENV181185375
OELK01000369
[OELK] metagenome; 1998
99
174
+
Glu
CTC
[ENA]
¢þ
>WENV181185367
OELK01000180
[OELK] metagenome; 1998
124
53
-
Gln
CTG
[ENA]
¢þ
>WENV181185406
OELK01001744
[OELK] metagenome; 1998
140
53
-
Leu
TAG
[ENA]
¢þ
>WENV181185395
OELK01001068
[OELK] metagenome; 1998
178
251
+
His
GTG
[ENA]
¢þ
>WENV181185394
OELK01001043
[OELK] metagenome; 1998
184
109
-
Ala
TGC
[ENA]
¢þ
>WENV181185368
OELK01000197
[OELK] metagenome; 1998
200
117
-
Tyr
GTA
[ENA]
¢þ
>WENV181185364
OELK01000097
[OELK] metagenome; 1998
203
111
-
Ser
GCT
[ENA]
¢þ
>WENV181185383
OELK01000512
[OELK] metagenome; 1998
272
196
-
Pro
TGG
[ENA]
¢þ
>WENV181185392
OELK01001000
[OELK] metagenome; 1998
319
391
+
Lys
CTT
[ENA]
¢þ
>WENV181185399
OELK01001106
[OELK] metagenome; 1998
324
251
-
Arg
TCT
[ENA]
¢þ
>WENV181185372
OELK01000295
[OELK] metagenome; 1998
346
420
+
Thr
TGT
[ENA]
¢þ
>WENV181185405
OELK01001738
[OELK] metagenome; 1998
348
275
-
Val
TAC
[ENA]
¢þ
>WENV181185400
OELK01001213
[OELK] metagenome; 1998
386
312
-
His
GTG
[ENA]
¢þ
>WENV181185403
OELK01001612
[OELK] metagenome; 1998
389
319
-
Gly
TCC
[ENA]
¢þ
>WENV181185387
OELK01000852
[OELK] metagenome; 1998
430
501
+
Arg
TCG
[ENA]
¢þ
>WENV181185396
OELK01001068
[OELK] metagenome; 1998
484
555
+
Ala
TGC
[ENA]
¢þ
>WENV181185393
OELK01001020
[OELK] metagenome; 1998
484
558
+
Ile
GAT
[ENA]
¢þ
>WENV181185365
OELK01000142
[OELK] metagenome; 1998
485
409
-
Pro
GGG
[ENA]
¢þ
>WENV181185378
OELK01000391
[OELK] metagenome; 1998
495
422
-
Thr
CGT
[ENA]
¢þ
>WENV181185384
OELK01000607
[OELK] metagenome; 1998
546
637
+
Ser
GGA
[ENA]
¢þ
>WENV181185397
OELK01001068
[OELK] metagenome; 1998
560
634
+
Thr
TGT
[ENA]
¢þ
>WENV181185374
OELK01000355
[OELK] metagenome; 1998
570
498
-
Gln
TTG
[ENA]
¢þ
>WENV181185388
OELK01000852
[OELK] metagenome; 1998
615
686
+
Cys
GCA
[ENA]
¢þ
>WENV181185380
OELK01000479
[OELK] metagenome; 1998
638
564
-
Pro
CGG
[ENA]
¢þ
>WENV181185389
OELK01000852
[OELK] metagenome; 1998
689
760
+
Arg
TCT
[ENA]
¢þ
>WENV181185379
OELK01000415
[OELK] metagenome; 1998
693
780
+
Ser
TGA
[ENA]
¢þ
>WENV181185404
OELK01001635
[OELK] metagenome; 1998
696
784
+
Ser
TGA
[ENA]
¢þ
>WENV181185398
OELK01001068
[OELK] metagenome; 1998
716
787
+
Trp
CCA
[ENA]
¢þ
>WENV181185370
OELK01000270
[OELK] metagenome; 1998
719
806
+
Leu
GAG
[ENA]
¢þ
>WENV181185381
OELK01000495
[OELK] metagenome; 1998
807
732
-
Pro
GGG
[ENA]
¢þ
>WENV181185373
OELK01000330
[OELK] metagenome; 1998
828
912
+
Leu
TAA
[ENA]
¢þ
>WENV181185402
OELK01001427
[OELK] metagenome; 1998
1002
1094
+
Ser
CGA
[ENA]
¢þ
>WENV181185366
OELK01000146
[OELK] metagenome; 1998
1090
1018
-
Ile2
CAT
[ENA]
¢þ
>WENV181185386
OELK01000845
[OELK] metagenome; 1998
1091
1017
-
Ala
CGC
[ENA]
¢þ
>WENV181185369
OELK01000250
[OELK] metagenome; 1998
1108
1037
-
Val
CAC
[ENA]
¢þ
>WENV181185407
OELK01001747
[OELK] metagenome; 1998
1138
1066
-
Arg
GCG
[ENA]
¢þ
>WENV181185363
OELK01000057
[OELK] metagenome; 1998
1387
1470
+
Leu
CAA
[ENA]
¢þ
>WENV181185371
OELK01000289
[OELK] metagenome; 1998
1530
1456
-
Trp
CCA
[ENA]
¢þ
>WENV181185385
OELK01000672
[OELK] metagenome; 1998
1553
1465
-
Ser
GGA
[ENA]
¢þ
>WENV181185382
OELK01000512
[OELK] metagenome; 1998
1607
1679
+
Gly
TCC
[ENA]
¢þ
>WENV181185391
OELK01000911
[OELK] metagenome; 1998
1705
1621
-
Leu
CAG
[ENA]
¢þ
>WENV181185377
OELK01000389
[OELK] metagenome; 1998
1857
1783
-
Arg
ACG
[ENA]
¢þ
>WENV181185376
OELK01000389
[OELK] metagenome; 1998
1990
1901
-
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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