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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OELQ] metagenome; 1998
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181185522
OELQ01000584
[OELQ] metagenome; 1998
7
81
+
Arg
CCT
[ENA]
¢þ
>WENV181185525
OELQ01001324
[OELQ] metagenome; 1998
132
216
+
Leu
TAA
[ENA]
¢þ
>WENV181185512
OELQ01000168
[OELQ] metagenome; 1998
159
86
-
Ala
TGC
[ENA]
¢þ
>WENV181185513
OELQ01000254
[OELQ] metagenome; 1998
206
278
+
Thr
CGT
[ENA]
¢þ
>WENV181185530
OELQ01001704
[OELQ] metagenome; 1998
298
372
+
Glu
CTC
[ENA]
¢þ
>WENV181185527
OELQ01001425
[OELQ] metagenome; 1998
453
380
-
Arg
TCT
[ENA]
¢þ
>WENV181185528
OELQ01001484
[OELQ] metagenome; 1998
611
684
+
Ala
GGC
[ENA]
¢þ
>WENV181185524
OELQ01001124
[OELQ] metagenome; 1998
806
725
-
Leu
GAG
[ENA]
¢þ
>WENV181185529
OELQ01001484
[OELQ] metagenome; 1998
816
889
+
Gly
GCC
[ENA]
¢þ
>WENV181185521
OELQ01000481
[OELQ] metagenome; 1998
1053
979
-
Ile
GAT
[ENA]
¢þ
>WENV181185520
OELQ01000442
[OELQ] metagenome; 1998
1125
1050
-
Pro
CGG
[ENA]
¢þ
>WENV181185519
OELQ01000442
[OELQ] metagenome; 1998
1351
1277
-
Arg
ACG
[ENA]
¢þ
>WENV181185518
OELQ01000442
[OELQ] metagenome; 1998
1430
1357
-
Val
GAC
[ENA]
¢þ
>WENV181185517
OELQ01000442
[OELQ] metagenome; 1998
1595
1521
-
fMet
CAT
[ENA]
¢þ
>WENV181185515
OELQ01000298
[OELQ] metagenome; 1998
1742
1817
+
His
GTG
[ENA]
¢þ
>WENV181185523
OELQ01000662
[OELQ] metagenome; 1998
1915
1822
-
SeC
TCA
[ENA]
¢þ
>WENV181185516
OELQ01000298
[OELQ] metagenome; 1998
1933
2006
+
Trp
CCA
[ENA]
¢þ
>WENV181185531
OELQ01001953
[OELQ] metagenome; 1998
2145
2072
-
Phe
GAA
[ENA]
¢þ
>WENV181185514
OELQ01000273
[OELQ] metagenome; 1998
2876
2802
-
Asn
GTT
[ENA]
¢þ
>WENV181185526
OELQ01001421
[OELQ] metagenome; 1998
3531
3458
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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