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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OEMI] metagenome; 1998
HIT:
28 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181185968
OEMI01000539
[OEMI] metagenome; 1998
114
39
-
Ile2
CAT
[ENA]
¢þ
>WENV181185971
OEMI01000620
[OEMI] metagenome; 1998
117
41
-
Pro
TGG
[ENA]
¢þ
>WENV181185973
OEMI01000639
[OEMI] metagenome; 1998
343
267
-
Val
TAC
[ENA]
¢þ
>WENV181185967
OEMI01000530
[OEMI] metagenome; 1998
509
434
-
Ala
CGC
[ENA]
¢þ
>WENV181185972
OEMI01000636
[OEMI] metagenome; 1998
535
609
+
Glu
CTC
[ENA]
¢þ
>WENV181185974
OEMI01000819
[OEMI] metagenome; 1998
605
689
+
Leu
GAG
[ENA]
¢þ
>WENV181185979
OEMI01001151
[OEMI] metagenome; 1998
729
654
-
Lys
TTT
[ENA]
¢þ
>WENV181185958
OEMI01000093
[OEMI] metagenome; 1998
929
1004
+
Thr
TGT
[ENA]
¢þ
>WENV181185980
OEMI01001334
[OEMI] metagenome; 1998
1099
1187
+
Leu
CAA
[ENA]
¢þ
>WENV181185966
OEMI01000454
[OEMI] metagenome; 1998
1200
1276
+
Pro
CGG
[ENA]
¢þ
>WENV181185959
OEMI01000093
[OEMI] metagenome; 1998
1243
1331
+
Tyr
GTA
[ENA]
¢þ
>WENV181185960
OEMI01000093
[OEMI] metagenome; 1998
1673
1745
+
Thr
GGT
[ENA]
¢þ
>WENV181185969
OEMI01000615
[OEMI] metagenome; 1998
2009
2085
+
Arg
TCT
[ENA]
¢þ
>WENV181185984
OEMI01001597
[OEMI] metagenome; 1998
2320
2234
-
Leu
CAG
[ENA]
¢þ
>WENV181185963
OEMI01000321
[OEMI] metagenome; 1998
2518
2597
+
Leu
CAA
[ENA]
¢þ
>WENV181185961
OEMI01000206
[OEMI] metagenome; 1998
2901
2826
-
Lys
CTT
[ENA]
¢þ
>WENV181185957
OEMI01000046
[OEMI] metagenome; 1998
3339
3250
-
Ser
TGA
[ENA]
¢þ
>WENV181185962
OEMI01000275
[OEMI] metagenome; 1998
3438
3514
+
fMet
CAT
[ENA]
¢þ
>WENV181185964
OEMI01000321
[OEMI] metagenome; 1998
3452
3542
+
Tyr
GTA
[ENA]
¢þ
>WENV181185983
OEMI01001576
[OEMI] metagenome; 1998
3544
3618
+
Cys
GCA
[ENA]
¢þ
>WENV181185976
OEMI01000887
[OEMI] metagenome; 1998
3740
3652
-
Leu
TAA
[ENA]
¢þ
>WENV181185982
OEMI01001565
[OEMI] metagenome; 1998
3951
4026
+
Ala
GGC
[ENA]
¢þ
>WENV181185977
OEMI01001054
[OEMI] metagenome; 1998
5030
4946
-
Leu
TAG
[ENA]
¢þ
>WENV181185978
OEMI01001056
[OEMI] metagenome; 1998
6126
6033
-
Ser
GCT
[ENA]
¢þ
>WENV181185975
OEMI01000877
[OEMI] metagenome; 1998
6898
6822
-
Arg
TCG
[ENA]
¢þ
>WENV181185981
OEMI01001541
[OEMI] metagenome; 1998
7971
8048
+
Val
GAC
[ENA]
¢þ
>WENV181185965
OEMI01000444
[OEMI] metagenome; 1998
9607
9703
+
SeC
TCA
[ENA]
¢þ
>WENV181185970
OEMI01000620
[OEMI] metagenome; 1998
10080
10169
+
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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