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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OEMK] metagenome; 1998
HIT:
23 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181186012
OEMK01001539
[OEMK] metagenome; 1998
81
6
-
Thr
CGT
[ENA]
¢þ
>WENV181185993
OEMK01000015
[OEMK] metagenome; 1998
106
30
-
Arg
CCG
[ENA]
¢þ
>WENV181186004
OEMK01000666
[OEMK] metagenome; 1998
128
202
+
Thr
TGT
[ENA]
¢þ
>WENV181186008
OEMK01001165
[OEMK] metagenome; 1998
156
232
+
Asp
GTC
[ENA]
¢þ
>WENV181185996
OEMK01000257
[OEMK] metagenome; 1998
254
329
+
Ala
GGC
[ENA]
¢þ
>WENV181185997
OEMK01000307
[OEMK] metagenome; 1998
451
536
+
Leu
CAA
[ENA]
¢þ
>WENV181186014
OEMK01001663
[OEMK] metagenome; 1998
491
567
+
Arg
ACG
[ENA]
¢þ
>WENV181185994
OEMK01000097
[OEMK] metagenome; 1998
904
980
+
Met
CAT
[ENA]
¢þ
>WENV181186005
OEMK01000674
[OEMK] metagenome; 1998
925
850
-
Lys
CTT
[ENA]
¢þ
>WENV181185995
OEMK01000220
[OEMK] metagenome; 1998
991
1067
+
Pro
GGG
[ENA]
¢þ
>WENV181186013
OEMK01001612
[OEMK] metagenome; 1998
1030
956
-
Gln
TTG
[ENA]
¢þ
>WENV181186011
OEMK01001379
[OEMK] metagenome; 1998
1127
1216
+
Ser
GGA
[ENA]
¢þ
>WENV181186000
OEMK01000454
[OEMK] metagenome; 1998
1174
1248
+
Gly
GCC
[ENA]
¢þ
>WENV181186007
OEMK01000829
[OEMK] metagenome; 1998
1775
1700
-
Ala
CGC
[ENA]
¢þ
>WENV181186010
OEMK01001310
[OEMK] metagenome; 1998
1908
1822
-
Leu
GAG
[ENA]
¢þ
>WENV181185999
OEMK01000346
[OEMK] metagenome; 1998
2035
1959
-
Arg
TCT
[ENA]
¢þ
>WENV181186009
OEMK01001284
[OEMK] metagenome; 1998
2268
2192
-
Pro
CGG
[ENA]
¢þ
>WENV181185998
OEMK01000346
[OEMK] metagenome; 1998
2565
2489
-
Pro
TGG
[ENA]
¢þ
>WENV181186003
OEMK01000665
[OEMK] metagenome; 1998
5925
6009
+
Leu
TAG
[ENA]
¢þ
>WENV181186002
OEMK01000657
[OEMK] metagenome; 1998
5958
5885
-
Gly
TCC
[ENA]
¢þ
>WENV181186006
OEMK01000724
[OEMK] metagenome; 1998
7102
7186
+
Leu
CAG
[ENA]
¢þ
>WENV181186015
OEMK01001770
[OEMK] metagenome; 1998
7575
7501
-
Thr
CGT
[ENA]
¢þ
>WENV181186001
OEMK01000647
[OEMK] metagenome; 1998
10006
10082
+
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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