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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OEOZ] soil metagenome; soil
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181190381
OEOZ01001002
[OEOZ] soil metagenome; soil
13
89
+
Asp
GTC
[ENA]
¢þ
>WENV181190386
OEOZ01002663
[OEOZ] soil metagenome; soil
36
111
+
Thr
TGT
[ENA]
¢þ
>WENV181190388
OEOZ01003208
[OEOZ] soil metagenome; soil
63
139
+
Arg
ACG
[ENA]
¢þ
>WENV181190383
OEOZ01001843
[OEOZ] soil metagenome; soil
96
171
+
Thr
CGT
[ENA]
¢þ
>WENV181190382
OEOZ01001002
[OEOZ] soil metagenome; soil
98
173
+
Trp
CCA
[ENA]
¢þ
>WENV181190387
OEOZ01002663
[OEOZ] soil metagenome; soil
120
204
+
Tyr
GTA
[ENA]
¢þ
>WENV181190389
OEOZ01003311
[OEOZ] soil metagenome; soil
127
46
-
Tyr
GTA
[ENA]
¢þ
>WENV181190385
OEOZ01002368
[OEOZ] soil metagenome; soil
128
41
-
Ser
GGA
[ENA]
¢þ
>WENV181190379
OEOZ01000296
[OEOZ] soil metagenome; soil
141
66
-
Asn
GTT
[ENA]
¢þ
>WENV181190377
OEOZ01000211
[OEOZ] soil metagenome; soil
221
146
-
Phe
GAA
[ENA]
¢þ
>WENV181190378
OEOZ01000212
[OEOZ] soil metagenome; soil
228
142
-
Leu
GAG
[ENA]
¢þ
>WENV181190384
OEOZ01002339
[OEOZ] soil metagenome; soil
239
164
-
Lys
TTT
[ENA]
¢þ
>WENV181190380
OEOZ01000385
[OEOZ] soil metagenome; soil
380
305
-
Gly
GCC
[ENA]
¢þ
>WENV181190376
OEOZ01000003
[OEOZ] soil metagenome; soil
3407
3332
-
Ala
TGC
[ENA]
¢þ
>WENV181190375
OEOZ01000003
[OEOZ] soil metagenome; soil
3526
3450
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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