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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OEPA] soil metagenome; soil
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181190397
OEPA01002537
[OEPA] soil metagenome; soil
31
107
+
Arg
ACG
[ENA]
¢þ
>WENV181190393
OEPA01000684
[OEPA] soil metagenome; soil
41
117
+
Arg
TCT
[ENA]
¢þ
>WENV181190398
OEPA01002699
[OEPA] soil metagenome; soil
68
143
+
Val
TAC
[ENA]
¢þ
>WENV181190402
OEPA01003429
[OEPA] soil metagenome; soil
93
166
+
Gly
CCC
[ENA]
¢þ
>WENV181190401
OEPA01003126
[OEPA] soil metagenome; soil
99
23
-
Arg
CCG
[ENA]
¢þ
>WENV181190396
OEPA01002047
[OEPA] soil metagenome; soil
144
69
-
Gly
GCC
[ENA]
¢þ
>WENV181190399
OEPA01002699
[OEPA] soil metagenome; soil
146
221
+
Lys
TTT
[ENA]
¢þ
>WENV181190395
OEPA01001626
[OEPA] soil metagenome; soil
170
76
-
SeC
TCA
[ENA]
¢þ
>WENV181190403
OEPA01004184
[OEPA] soil metagenome; soil
179
104
-
Lys
TTT
[ENA]
¢þ
>WENV181190400
OEPA01003074
[OEPA] soil metagenome; soil
230
156
-
Arg
CCT
[ENA]
¢þ
>WENV181190394
OEPA01000864
[OEPA] soil metagenome; soil
230
306
+
Pro
CGG
[ENA]
¢þ
>WENV181190392
OEPA01000331
[OEPA] soil metagenome; soil
350
426
+
Pro
GGG
[ENA]
¢þ
>WENV181190391
OEPA01000050
[OEPA] soil metagenome; soil
497
568
+
fMet
CAT
[ENA]
¢þ
>WENV181190390
OEPA01000007
[OEPA] soil metagenome; soil
3519
3444
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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