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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OEPE] soil metagenome; soil
HIT:
7 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181190419
OEPE01001113
[OEPE] soil metagenome; soil
59
134
+
Val
TAC
[ENA]
¢þ
>WENV181190418
OEPE01000871
[OEPE] soil metagenome; soil
116
191
+
Ile2
CAT
[ENA]
¢þ
>WENV181190417
OEPE01000534
[OEPE] soil metagenome; soil
127
52
-
Glu
TTC
[ENA]
¢þ
>WENV181190420
OEPE01001113
[OEPE] soil metagenome; soil
138
210
+
Lys
TTT
[ENA]
¢þ
>WENV181190416
OEPE01000412
[OEPE] soil metagenome; soil
254
179
-
Asn
GTT
[ENA]
¢þ
>WENV181190414
OEPE01000004
[OEPE] soil metagenome; soil
1137
1063
-
Glu
CTC
[ENA]
¢þ
>WENV181190415
OEPE01000007
[OEPE] soil metagenome; soil
4516
4441
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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