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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OEPF] activated sludge metagenome; activated sludge
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181190434
OEPF01004550
[OEPF] activated sludge metagenome; activated sludge
16
92
+
fMet
CAT
[ENA]
¢þ
>WENV181190432
OEPF01003942
[OEPF] activated sludge metagenome; activated sludge
49
125
+
Met
CAT
[ENA]
¢þ
>WENV181190430
OEPF01003371
[OEPF] activated sludge metagenome; activated sludge
73
162
+
Ser
CGA
[ENA]
¢þ
>WENV181190429
OEPF01002759
[OEPF] activated sludge metagenome; activated sludge
95
170
+
Glu
TTC
[ENA]
¢þ
>WENV181190428
OEPF01001516
[OEPF] activated sludge metagenome; activated sludge
103
11
-
Ser
GCT
[ENA]
¢þ
>WENV181190433
OEPF01004549
[OEPF] activated sludge metagenome; activated sludge
119
195
+
Arg
ACG
[ENA]
¢þ
>WENV181190431
OEPF01003579
[OEPF] activated sludge metagenome; activated sludge
134
59
-
Arg
CCT
[ENA]
¢þ
>WENV181190424
OEPF01000123
[OEPF] activated sludge metagenome; activated sludge
208
294
+
Leu
CAG
[ENA]
¢þ
>WENV181190425
OEPF01000123
[OEPF] activated sludge metagenome; activated sludge
323
409
+
Leu
CAG
[ENA]
¢þ
>WENV181190423
OEPF01000008
[OEPF] activated sludge metagenome; activated sludge
396
320
-
Asp
GTC
[ENA]
¢þ
>WENV181190426
OEPF01000123
[OEPF] activated sludge metagenome; activated sludge
452
528
+
Pro
TGG
[ENA]
¢þ
>WENV181190427
OEPF01000348
[OEPF] activated sludge metagenome; activated sludge
522
608
+
Leu
GAG
[ENA]
¢þ
>WENV181190422
OEPF01000008
[OEPF] activated sludge metagenome; activated sludge
3824
3749
-
Ala
TGC
[ENA]
¢þ
>WENV181190421
OEPF01000008
[OEPF] activated sludge metagenome; activated sludge
3943
3867
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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