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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OFAQ] metagenome; hydrothermal vent
HIT:
96 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181205883
OFAQ01004289
[OFAQ] metagenome; hydrothermal vent
23
107
+
Leu
GAG
[ENA]
¢þ
>WENV181205921
OFAQ01009849
[OFAQ] metagenome; hydrothermal vent
43
117
+
Met
CAT
[ENA]
¢þ
>WENV181205884
OFAQ01004418
[OFAQ] metagenome; hydrothermal vent
55
143
+
Ser
GGA
[ENA]
¢þ
>WENV181205911
OFAQ01008622
[OFAQ] metagenome; hydrothermal vent
65
138
+
Thr
GGT
[ENA]
¢þ
>WENV181205923
OFAQ01010220
[OFAQ] metagenome; hydrothermal vent
67
139
+
Asn
GTT
[ENA]
¢þ
>WENV181205895
OFAQ01005927
[OFAQ] metagenome; hydrothermal vent
84
1
-
Leu
CAG
[ENA]
¢þ
>WENV181205929
OFAQ01011283
[OFAQ] metagenome; hydrothermal vent
84
160
+
Pro
GGG
[ENA]
¢þ
>WENV181205872
OFAQ01003059
[OFAQ] metagenome; hydrothermal vent
96
172
+
Asp
GTC
[ENA]
¢þ
>WENV181205903
OFAQ01007276
[OFAQ] metagenome; hydrothermal vent
114
38
-
Pro
CGG
[ENA]
¢þ
>WENV181205912
OFAQ01008622
[OFAQ] metagenome; hydrothermal vent
142
216
+
Met
CAT
[ENA]
¢þ
>WENV181205916
OFAQ01009085
[OFAQ] metagenome; hydrothermal vent
144
70
-
Glu
TTC
[ENA]
¢þ
>WENV181205874
OFAQ01003263
[OFAQ] metagenome; hydrothermal vent
146
218
+
Gln
CTG
[ENA]
¢þ
>WENV181205853
OFAQ01000828
[OFAQ] metagenome; hydrothermal vent
149
62
-
Ser
GGA
[ENA]
¢þ
>WENV181205919
OFAQ01009582
[OFAQ] metagenome; hydrothermal vent
149
224
+
Asn
GTT
[ENA]
¢þ
>WENV181205897
OFAQ01006169
[OFAQ] metagenome; hydrothermal vent
150
226
+
Ala
TGC
[ENA]
¢þ
>WENV181205846
OFAQ01000645
[OFAQ] metagenome; hydrothermal vent
165
240
+
Pro
TGG
[ENA]
¢þ
>WENV181205906
OFAQ01007642
[OFAQ] metagenome; hydrothermal vent
176
250
+
Ala
TGC
[ENA]
¢þ
>WENV181205865
OFAQ01001811
[OFAQ] metagenome; hydrothermal vent
177
102
-
Val
TAC
[ENA]
¢þ
>WENV181205894
OFAQ01005927
[OFAQ] metagenome; hydrothermal vent
198
113
-
Leu
CAG
[ENA]
¢þ
>WENV181205887
OFAQ01004664
[OFAQ] metagenome; hydrothermal vent
214
138
-
Pro
TGG
[ENA]
¢þ
>WENV181205902
OFAQ01007268
[OFAQ] metagenome; hydrothermal vent
219
143
-
fMet
CAT
[ENA]
¢þ
>WENV181205898
OFAQ01006577
[OFAQ] metagenome; hydrothermal vent
222
308
+
Leu
CAA
[ENA]
¢þ
>WENV181205915
OFAQ01009085
[OFAQ] metagenome; hydrothermal vent
234
158
-
Glu
TTC
[ENA]
¢þ
>WENV181205917
OFAQ01009148
[OFAQ] metagenome; hydrothermal vent
243
327
+
Leu
TAG
[ENA]
¢þ
>WENV181205847
OFAQ01000645
[OFAQ] metagenome; hydrothermal vent
254
328
+
Arg
TCT
[ENA]
¢þ
>WENV181205924
OFAQ01010669
[OFAQ] metagenome; hydrothermal vent
278
353
+
Thr
GGT
[ENA]
¢þ
>WENV181205926
OFAQ01010742
[OFAQ] metagenome; hydrothermal vent
281
197
-
Leu
CAA
[ENA]
¢þ
>WENV181205889
OFAQ01004966
[OFAQ] metagenome; hydrothermal vent
282
357
+
Lys
TTT
[ENA]
¢þ
>WENV181205888
OFAQ01004812
[OFAQ] metagenome; hydrothermal vent
294
219
-
Thr
TGT
[ENA]
¢þ
>WENV181205901
OFAQ01007192
[OFAQ] metagenome; hydrothermal vent
301
385
+
Leu
CAA
[ENA]
¢þ
>WENV181205875
OFAQ01003263
[OFAQ] metagenome; hydrothermal vent
304
379
+
Glu
CTC
[ENA]
¢þ
>WENV181205866
OFAQ01001894
[OFAQ] metagenome; hydrothermal vent
308
395
+
Ser
TGA
[ENA]
¢þ
>WENV181205920
OFAQ01009601
[OFAQ] metagenome; hydrothermal vent
320
395
+
Lys
TTT
[ENA]
¢þ
>WENV181205869
OFAQ01002469
[OFAQ] metagenome; hydrothermal vent
322
247
-
Thr
TGT
[ENA]
¢þ
>WENV181205928
OFAQ01010972
[OFAQ] metagenome; hydrothermal vent
338
252
-
Leu
TAA
[ENA]
¢þ
>WENV181205910
OFAQ01008339
[OFAQ] metagenome; hydrothermal vent
343
259
-
Leu
CAA
[ENA]
¢þ
>WENV181205896
OFAQ01005997
[OFAQ] metagenome; hydrothermal vent
354
440
+
Leu
GAG
[ENA]
¢þ
>WENV181205881
OFAQ01004197
[OFAQ] metagenome; hydrothermal vent
355
444
+
Ser
CGA
[ENA]
¢þ
>WENV181205904
OFAQ01007484
[OFAQ] metagenome; hydrothermal vent
377
283
-
SeC
TCA
[ENA]
¢þ
>WENV181205918
OFAQ01009148
[OFAQ] metagenome; hydrothermal vent
378
451
+
Trp
CCA
[ENA]
¢þ
>WENV181205862
OFAQ01001374
[OFAQ] metagenome; hydrothermal vent
381
455
+
Ile2
CAT
[ENA]
¢þ
>WENV181205922
OFAQ01009891
[OFAQ] metagenome; hydrothermal vent
383
458
+
Ile2
CAT
[ENA]
¢þ
>WENV181205925
OFAQ01010669
[OFAQ] metagenome; hydrothermal vent
392
465
+
Met
CAT
[ENA]
¢þ
>WENV181205907
OFAQ01007895
[OFAQ] metagenome; hydrothermal vent
395
313
-
Leu
TAG
[ENA]
¢þ
>WENV181205914
OFAQ01009085
[OFAQ] metagenome; hydrothermal vent
399
325
-
Glu
TTC
[ENA]
¢þ
>WENV181205900
OFAQ01006876
[OFAQ] metagenome; hydrothermal vent
399
327
-
Glu
TTC
[ENA]
¢þ
>WENV181205878
OFAQ01003847
[OFAQ] metagenome; hydrothermal vent
410
337
-
Lys
CTT
[ENA]
¢þ
>WENV181205857
OFAQ01001160
[OFAQ] metagenome; hydrothermal vent
423
498
+
Ala
TGC
[ENA]
¢þ
>WENV181205927
OFAQ01010972
[OFAQ] metagenome; hydrothermal vent
424
351
-
Cys
GCA
[ENA]
¢þ
>WENV181205851
OFAQ01000803
[OFAQ] metagenome; hydrothermal vent
431
342
-
Ser
TGA
[ENA]
¢þ
>WENV181205908
OFAQ01007939
[OFAQ] metagenome; hydrothermal vent
437
510
+
Gly
CCC
[ENA]
¢þ
>WENV181205905
OFAQ01007638
[OFAQ] metagenome; hydrothermal vent
461
535
+
Glu
TTC
[ENA]
¢þ
>WENV181205890
OFAQ01005151
[OFAQ] metagenome; hydrothermal vent
471
396
-
Asn
GTT
[ENA]
¢þ
>WENV181205871
OFAQ01002877
[OFAQ] metagenome; hydrothermal vent
474
392
-
Tyr
GTA
[ENA]
¢þ
>WENV181205893
OFAQ01005612
[OFAQ] metagenome; hydrothermal vent
486
559
+
Gln
TTG
[ENA]
¢þ
>WENV181205877
OFAQ01003847
[OFAQ] metagenome; hydrothermal vent
489
415
-
Lys
CTT
[ENA]
¢þ
>WENV181205909
OFAQ01008310
[OFAQ] metagenome; hydrothermal vent
499
424
-
Cys
GCA
[ENA]
¢þ
>WENV181205913
OFAQ01009085
[OFAQ] metagenome; hydrothermal vent
501
426
-
Glu
TTC
[ENA]
¢þ
>WENV181205891
OFAQ01005292
[OFAQ] metagenome; hydrothermal vent
516
432
-
Leu
CAA
[ENA]
¢þ
>WENV181205879
OFAQ01004133
[OFAQ] metagenome; hydrothermal vent
520
593
+
Glu
TTC
[ENA]
¢þ
>WENV181205867
OFAQ01002062
[OFAQ] metagenome; hydrothermal vent
526
437
-
Ser
CGA
[ENA]
¢þ
>WENV181205886
OFAQ01004533
[OFAQ] metagenome; hydrothermal vent
590
665
+
Glu
TTC
[ENA]
¢þ
>WENV181205845
OFAQ01000572
[OFAQ] metagenome; hydrothermal vent
595
509
-
Leu
TAA
[ENA]
¢þ
>WENV181205885
OFAQ01004512
[OFAQ] metagenome; hydrothermal vent
598
525
-
Gly
TCC
[ENA]
¢þ
>WENV181205880
OFAQ01004133
[OFAQ] metagenome; hydrothermal vent
602
691
+
Ser
TGA
[ENA]
¢þ
>WENV181205892
OFAQ01005502
[OFAQ] metagenome; hydrothermal vent
617
532
-
Leu
TAA
[ENA]
¢þ
>WENV181205899
OFAQ01006776
[OFAQ] metagenome; hydrothermal vent
625
551
-
Arg
CCG
[ENA]
¢þ
>WENV181205868
OFAQ01002462
[OFAQ] metagenome; hydrothermal vent
627
551
-
Val
GAC
[ENA]
¢þ
>WENV181205876
OFAQ01003309
[OFAQ] metagenome; hydrothermal vent
633
558
-
Thr
CGT
[ENA]
¢þ
>WENV181205854
OFAQ01000870
[OFAQ] metagenome; hydrothermal vent
633
704
+
Gln
TTG
[ENA]
¢þ
>WENV181205858
OFAQ01001287
[OFAQ] metagenome; hydrothermal vent
641
565
-
fMet
CAT
[ENA]
¢þ
>WENV181205873
OFAQ01003204
[OFAQ] metagenome; hydrothermal vent
666
592
-
Asn
GTT
[ENA]
¢þ
>WENV181205882
OFAQ01004280
[OFAQ] metagenome; hydrothermal vent
696
620
-
Met
CAT
[ENA]
¢þ
>WENV181205861
OFAQ01001295
[OFAQ] metagenome; hydrothermal vent
708
621
-
Ser
TGA
[ENA]
¢þ
>WENV181205844
OFAQ01000515
[OFAQ] metagenome; hydrothermal vent
713
637
-
Arg
ACG
[ENA]
¢þ
>WENV181205849
OFAQ01000735
[OFAQ] metagenome; hydrothermal vent
743
668
-
Glu
TTC
[ENA]
¢þ
>WENV181205852
OFAQ01000813
[OFAQ] metagenome; hydrothermal vent
770
695
-
His
GTG
[ENA]
¢þ
>WENV181205859
OFAQ01001295
[OFAQ] metagenome; hydrothermal vent
770
863
+
Ser
GCT
[ENA]
¢þ
>WENV181205870
OFAQ01002846
[OFAQ] metagenome; hydrothermal vent
784
860
+
Met
CAT
[ENA]
¢þ
>WENV181205864
OFAQ01001432
[OFAQ] metagenome; hydrothermal vent
785
709
-
Ile
GAT
[ENA]
¢þ
>WENV181205843
OFAQ01000515
[OFAQ] metagenome; hydrothermal vent
818
729
-
Ser
GCT
[ENA]
¢þ
>WENV181205841
OFAQ01000351
[OFAQ] metagenome; hydrothermal vent
850
775
-
Gly
GCC
[ENA]
¢þ
>WENV181205863
OFAQ01001432
[OFAQ] metagenome; hydrothermal vent
890
815
-
Ala
TGC
[ENA]
¢þ
>WENV181205842
OFAQ01000411
[OFAQ] metagenome; hydrothermal vent
926
1000
+
Asp
GTC
[ENA]
¢þ
>WENV181205860
OFAQ01001295
[OFAQ] metagenome; hydrothermal vent
935
1009
+
Arg
ACG
[ENA]
¢þ
>WENV181205848
OFAQ01000718
[OFAQ] metagenome; hydrothermal vent
968
1041
+
Phe
GAA
[ENA]
¢þ
>WENV181205855
OFAQ01000938
[OFAQ] metagenome; hydrothermal vent
1001
928
-
Glu
TTC
[ENA]
¢þ
>WENV181205856
OFAQ01001118
[OFAQ] metagenome; hydrothermal vent
1096
1020
-
Ile2
CAT
[ENA]
¢þ
>WENV181205850
OFAQ01000736
[OFAQ] metagenome; hydrothermal vent
1356
1281
-
Lys
TTT
[ENA]
¢þ
>WENV181205840
OFAQ01000341
[OFAQ] metagenome; hydrothermal vent
1392
1316
-
Pro
TGG
[ENA]
¢þ
>WENV181205839
OFAQ01000341
[OFAQ] metagenome; hydrothermal vent
1472
1397
-
His
GTG
[ENA]
¢þ
>WENV181205838
OFAQ01000214
[OFAQ] metagenome; hydrothermal vent
1488
1403
-
Ser
TGA
[ENA]
¢þ
>WENV181205837
OFAQ01000011
[OFAQ] metagenome; hydrothermal vent
4600
4525
-
Ala
TGC
[ENA]
¢þ
>WENV181205835
OFAQ01000004
[OFAQ] metagenome; hydrothermal vent
4650
4576
-
Ala
TGC
[ENA]
¢þ
>WENV181205836
OFAQ01000011
[OFAQ] metagenome; hydrothermal vent
4713
4637
-
Ile
GAT
[ENA]
¢þ
>WENV181205834
OFAQ01000004
[OFAQ] metagenome; hydrothermal vent
4807
4733
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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