This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFAS] metagenome; hydrothermal vent
HIT:
99 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181206039
OFAS01000443
[OFAS] metagenome; hydrothermal vent
68
144
+
Arg
TCT
[ENA]
¢þ
>WENV181206064
OFAS01002103
[OFAS] metagenome; hydrothermal vent
72
146
+
Gln
TTG
[ENA]
¢þ
>WENV181206082
OFAS01004822
[OFAS] metagenome; hydrothermal vent
78
154
+
Ile
GAT
[ENA]
¢þ
>WENV181206071
OFAS01003297
[OFAS] metagenome; hydrothermal vent
104
180
+
Asp
GTC
[ENA]
¢þ
>WENV181206104
OFAS01008190
[OFAS] metagenome; hydrothermal vent
107
189
+
Tyr
GTA
[ENA]
¢þ
>WENV181206038
OFAS01000427
[OFAS] metagenome; hydrothermal vent
114
41
-
Gly
TCC
[ENA]
¢þ
>WENV181206095
OFAS01006460
[OFAS] metagenome; hydrothermal vent
120
195
+
Gly
GCC
[ENA]
¢þ
>WENV181206084
OFAS01004868
[OFAS] metagenome; hydrothermal vent
125
201
+
Arg
TCT
[ENA]
¢þ
>WENV181206097
OFAS01006794
[OFAS] metagenome; hydrothermal vent
132
206
+
Lys
CTT
[ENA]
¢þ
>WENV181206045
OFAS01000649
[OFAS] metagenome; hydrothermal vent
133
208
+
Phe
GAA
[ENA]
¢þ
>WENV181206109
OFAS01009236
[OFAS] metagenome; hydrothermal vent
135
207
+
Gln
CTG
[ENA]
¢þ
>WENV181206081
OFAS01004484
[OFAS] metagenome; hydrothermal vent
139
55
-
Leu
TAA
[ENA]
¢þ
>WENV181206075
OFAS01003715
[OFAS] metagenome; hydrothermal vent
147
231
+
Leu
CAA
[ENA]
¢þ
>WENV181206093
OFAS01006174
[OFAS] metagenome; hydrothermal vent
148
221
+
Gly
TCC
[ENA]
¢þ
>WENV181206102
OFAS01007943
[OFAS] metagenome; hydrothermal vent
156
228
+
Glu
TTC
[ENA]
¢þ
>WENV181206108
OFAS01009185
[OFAS] metagenome; hydrothermal vent
174
101
-
Trp
CCA
[ENA]
¢þ
>WENV181206047
OFAS01000801
[OFAS] metagenome; hydrothermal vent
174
263
+
Ser
GCT
[ENA]
¢þ
>WENV181206113
OFAS01009616
[OFAS] metagenome; hydrothermal vent
180
106
-
Arg
TCT
[ENA]
¢þ
>WENV181206083
OFAS01004822
[OFAS] metagenome; hydrothermal vent
181
253
+
Ala
TGC
[ENA]
¢þ
>WENV181206040
OFAS01000443
[OFAS] metagenome; hydrothermal vent
185
260
+
His
GTG
[ENA]
¢þ
>WENV181206121
OFAS01011073
[OFAS] metagenome; hydrothermal vent
191
264
+
Gly
TCC
[ENA]
¢þ
>WENV181206085
OFAS01004868
[OFAS] metagenome; hydrothermal vent
204
294
+
Ile
TAT
[ENA]
¢þ
>WENV181206111
OFAS01009596
[OFAS] metagenome; hydrothermal vent
221
146
-
Lys
TTT
[ENA]
¢þ
>WENV181206118
OFAS01010708
[OFAS] metagenome; hydrothermal vent
223
299
+
Val
GAC
[ENA]
¢þ
>WENV181206028
OFAS01000105
[OFAS] metagenome; hydrothermal vent
225
301
+
Ile
GAT
[ENA]
¢þ
>WENV181206116
OFAS01010168
[OFAS] metagenome; hydrothermal vent
231
306
+
Thr
GGT
[ENA]
¢þ
>WENV181206106
OFAS01008741
[OFAS] metagenome; hydrothermal vent
254
180
-
Val
CAC
[ENA]
¢þ
>WENV181206088
OFAS01005052
[OFAS] metagenome; hydrothermal vent
254
343
+
Ser
CGA
[ENA]
¢þ
>WENV181206041
OFAS01000443
[OFAS] metagenome; hydrothermal vent
265
341
+
Pro
TGG
[ENA]
¢þ
>WENV181206101
OFAS01007800
[OFAS] metagenome; hydrothermal vent
272
347
+
Thr
TGT
[ENA]
¢þ
>WENV181206048
OFAS01000801
[OFAS] metagenome; hydrothermal vent
279
355
+
Arg
ACG
[ENA]
¢þ
>WENV181206105
OFAS01008729
[OFAS] metagenome; hydrothermal vent
282
357
+
Lys
TTT
[ENA]
¢þ
>WENV181206037
OFAS01000427
[OFAS] metagenome; hydrothermal vent
283
202
-
Tyr
GTA
[ENA]
¢þ
>WENV181206053
OFAS01001133
[OFAS] metagenome; hydrothermal vent
286
212
-
Arg
ACG
[ENA]
¢þ
>WENV181206110
OFAS01009236
[OFAS] metagenome; hydrothermal vent
293
368
+
Glu
CTC
[ENA]
¢þ
>WENV181206112
OFAS01009616
[OFAS] metagenome; hydrothermal vent
298
223
-
Pro
TGG
[ENA]
¢þ
>WENV181206103
OFAS01008113
[OFAS] metagenome; hydrothermal vent
299
223
-
Arg
CCG
[ENA]
¢þ
>WENV181206080
OFAS01004484
[OFAS] metagenome; hydrothermal vent
301
219
-
Leu
TAG
[ENA]
¢þ
>WENV181206096
OFAS01006519
[OFAS] metagenome; hydrothermal vent
301
227
-
Ile
GAT
[ENA]
¢þ
>WENV181206107
OFAS01009185
[OFAS] metagenome; hydrothermal vent
309
225
-
Leu
TAG
[ENA]
¢þ
>WENV181206099
OFAS01007224
[OFAS] metagenome; hydrothermal vent
314
230
-
Leu
CAA
[ENA]
¢þ
>WENV181206076
OFAS01003855
[OFAS] metagenome; hydrothermal vent
314
390
+
Val
GAC
[ENA]
¢þ
>WENV181206072
OFAS01003306
[OFAS] metagenome; hydrothermal vent
317
241
-
Pro
TGG
[ENA]
¢þ
>WENV181206056
OFAS01001421
[OFAS] metagenome; hydrothermal vent
325
400
+
Ala
GGC
[ENA]
¢þ
>WENV181206114
OFAS01009883
[OFAS] metagenome; hydrothermal vent
325
412
+
Ser
CGA
[ENA]
¢þ
>WENV181206042
OFAS01000476
[OFAS] metagenome; hydrothermal vent
335
249
-
Leu
TAA
[ENA]
¢þ
>WENV181206029
OFAS01000105
[OFAS] metagenome; hydrothermal vent
337
412
+
Ala
TGC
[ENA]
¢þ
>WENV181206120
OFAS01011023
[OFAS] metagenome; hydrothermal vent
338
252
-
Leu
TAA
[ENA]
¢þ
>WENV181206091
OFAS01005535
[OFAS] metagenome; hydrothermal vent
344
428
+
Leu
CAA
[ENA]
¢þ
>WENV181206117
OFAS01010168
[OFAS] metagenome; hydrothermal vent
345
418
+
Met
CAT
[ENA]
¢þ
>WENV181206089
OFAS01005071
[OFAS] metagenome; hydrothermal vent
356
269
-
Ser
GGA
[ENA]
¢þ
>WENV181206036
OFAS01000427
[OFAS] metagenome; hydrothermal vent
378
302
-
Thr
TGT
[ENA]
¢þ
>WENV181206074
OFAS01003471
[OFAS] metagenome; hydrothermal vent
392
317
-
Thr
TGT
[ENA]
¢þ
>WENV181206066
OFAS01002371
[OFAS] metagenome; hydrothermal vent
396
472
+
Met
CAT
[ENA]
¢þ
>WENV181206058
OFAS01001688
[OFAS] metagenome; hydrothermal vent
398
473
+
Phe
GAA
[ENA]
¢þ
>WENV181206119
OFAS01011023
[OFAS] metagenome; hydrothermal vent
424
351
-
Cys
GCA
[ENA]
¢þ
>WENV181206100
OFAS01007313
[OFAS] metagenome; hydrothermal vent
433
508
+
Lys
TTT
[ENA]
¢þ
>WENV181206030
OFAS01000105
[OFAS] metagenome; hydrothermal vent
442
518
+
Ile
GAT
[ENA]
¢þ
>WENV181206115
OFAS01010035
[OFAS] metagenome; hydrothermal vent
446
370
-
Ala
GGC
[ENA]
¢þ
>WENV181206052
OFAS01001133
[OFAS] metagenome; hydrothermal vent
451
358
-
Ser
GCT
[ENA]
¢þ
>WENV181206094
OFAS01006357
[OFAS] metagenome; hydrothermal vent
451
535
+
Ser
GCT
[ENA]
¢þ
>WENV181206067
OFAS01002371
[OFAS] metagenome; hydrothermal vent
481
565
+
Leu
TAG
[ENA]
¢þ
>WENV181206098
OFAS01007075
[OFAS] metagenome; hydrothermal vent
482
556
+
Glu
TTC
[ENA]
¢þ
>WENV181206065
OFAS01002306
[OFAS] metagenome; hydrothermal vent
504
593
+
Ser
CGA
[ENA]
¢þ
>WENV181206092
OFAS01006155
[OFAS] metagenome; hydrothermal vent
507
431
-
Ala
TGC
[ENA]
¢þ
>WENV181206051
OFAS01001133
[OFAS] metagenome; hydrothermal vent
513
600
+
Ser
TGA
[ENA]
¢þ
>WENV181206086
OFAS01004933
[OFAS] metagenome; hydrothermal vent
557
631
+
Asp
GTC
[ENA]
¢þ
>WENV181206035
OFAS01000390
[OFAS] metagenome; hydrothermal vent
558
485
-
Ala
GGC
[ENA]
¢þ
>WENV181206049
OFAS01000892
[OFAS] metagenome; hydrothermal vent
563
634
+
Gln
TTG
[ENA]
¢þ
>WENV181206078
OFAS01004108
[OFAS] metagenome; hydrothermal vent
584
657
+
Gln
TTG
[ENA]
¢þ
>WENV181206059
OFAS01001956
[OFAS] metagenome; hydrothermal vent
584
658
+
Ile
GAT
[ENA]
¢þ
>WENV181206068
OFAS01002371
[OFAS] metagenome; hydrothermal vent
589
663
+
Gln
TTG
[ENA]
¢þ
>WENV181206050
OFAS01001074
[OFAS] metagenome; hydrothermal vent
590
665
+
Glu
TTC
[ENA]
¢þ
>WENV181206069
OFAS01002734
[OFAS] metagenome; hydrothermal vent
634
559
-
Thr
CGT
[ENA]
¢þ
>WENV181206057
OFAS01001444
[OFAS] metagenome; hydrothermal vent
640
714
+
Met
CAT
[ENA]
¢þ
>WENV181206087
OFAS01004936
[OFAS] metagenome; hydrothermal vent
647
563
-
Leu
CAA
[ENA]
¢þ
>WENV181206090
OFAS01005411
[OFAS] metagenome; hydrothermal vent
647
572
-
Thr
CGT
[ENA]
¢þ
>WENV181206060
OFAS01001956
[OFAS] metagenome; hydrothermal vent
665
739
+
Lys
TTT
[ENA]
¢þ
>WENV181206046
OFAS01000759
[OFAS] metagenome; hydrothermal vent
683
758
+
Gly
GCC
[ENA]
¢þ
>WENV181206079
OFAS01004368
[OFAS] metagenome; hydrothermal vent
697
609
-
Ser
GGA
[ENA]
¢þ
>WENV181206070
OFAS01002775
[OFAS] metagenome; hydrothermal vent
711
797
+
Leu
GAG
[ENA]
¢þ
>WENV181206077
OFAS01004051
[OFAS] metagenome; hydrothermal vent
763
691
-
Thr
GGT
[ENA]
¢þ
>WENV181206073
OFAS01003313
[OFAS] metagenome; hydrothermal vent
770
695
-
His
GTG
[ENA]
¢þ
>WENV181206032
OFAS01000235
[OFAS] metagenome; hydrothermal vent
782
708
-
Ile2
CAT
[ENA]
¢þ
>WENV181206061
OFAS01001956
[OFAS] metagenome; hydrothermal vent
805
877
+
Pro
TGG
[ENA]
¢þ
>WENV181206055
OFAS01001409
[OFAS] metagenome; hydrothermal vent
852
927
+
Asn
GTT
[ENA]
¢þ
>WENV181206054
OFAS01001270
[OFAS] metagenome; hydrothermal vent
857
784
-
Glu
TTC
[ENA]
¢þ
>WENV181206063
OFAS01001959
[OFAS] metagenome; hydrothermal vent
863
787
-
Ile2
CAT
[ENA]
¢þ
>WENV181206062
OFAS01001956
[OFAS] metagenome; hydrothermal vent
883
955
+
Glu
TTC
[ENA]
¢þ
>WENV181206044
OFAS01000637
[OFAS] metagenome; hydrothermal vent
963
1052
+
Ser
TGA
[ENA]
¢þ
>WENV181206043
OFAS01000588
[OFAS] metagenome; hydrothermal vent
1029
1102
+
Phe
GAA
[ENA]
¢þ
>WENV181206034
OFAS01000284
[OFAS] metagenome; hydrothermal vent
1039
1123
+
Leu
GAG
[ENA]
¢þ
>WENV181206033
OFAS01000267
[OFAS] metagenome; hydrothermal vent
1393
1308
-
Ser
TGA
[ENA]
¢þ
>WENV181206031
OFAS01000193
[OFAS] metagenome; hydrothermal vent
1551
1476
-
Arg
CCT
[ENA]
¢þ
>WENV181206027
OFAS01000063
[OFAS] metagenome; hydrothermal vent
2244
2169
-
Glu
TTC
[ENA]
¢þ
>WENV181206026
OFAS01000056
[OFAS] metagenome; hydrothermal vent
2385
2310
-
Ala
TGC
[ENA]
¢þ
>WENV181206025
OFAS01000056
[OFAS] metagenome; hydrothermal vent
2498
2422
-
Ile
GAT
[ENA]
¢þ
>WENV181206024
OFAS01000015
[OFAS] metagenome; hydrothermal vent
4050
3976
-
Ala
TGC
[ENA]
¢þ
>WENV181206023
OFAS01000015
[OFAS] metagenome; hydrothermal vent
4207
4133
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK