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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OFAU] metagenome; hydrothermal vent
HIT:
70 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181206404
OFAU01003246
[OFAU] metagenome; hydrothermal vent
4
92
+
Ser
TGA
[ENA]
¢þ
>WENV181206376
OFAU01000329
[OFAU] metagenome; hydrothermal vent
40
124
+
Leu
TAG
[ENA]
¢þ
>WENV181206413
OFAU01004018
[OFAU] metagenome; hydrothermal vent
46
121
+
Thr
CGT
[ENA]
¢þ
>WENV181206430
OFAU01007021
[OFAU] metagenome; hydrothermal vent
56
130
+
Gln
CTG
[ENA]
¢þ
>WENV181206396
OFAU01002082
[OFAU] metagenome; hydrothermal vent
68
152
+
Leu
GAG
[ENA]
¢þ
>WENV181206383
OFAU01000798
[OFAU] metagenome; hydrothermal vent
94
169
+
Val
TAC
[ENA]
¢þ
>WENV181206420
OFAU01005971
[OFAU] metagenome; hydrothermal vent
98
171
+
Gly
CCC
[ENA]
¢þ
>WENV181206372
OFAU01000301
[OFAU] metagenome; hydrothermal vent
102
28
-
Ile2
CAT
[ENA]
¢þ
>WENV181206419
OFAU01005898
[OFAU] metagenome; hydrothermal vent
103
178
+
Lys
TTT
[ENA]
¢þ
>WENV181206385
OFAU01000848
[OFAU] metagenome; hydrothermal vent
105
30
-
Phe
GAA
[ENA]
¢þ
>WENV181206375
OFAU01000325
[OFAU] metagenome; hydrothermal vent
114
41
-
Gly
TCC
[ENA]
¢þ
>WENV181206418
OFAU01005465
[OFAU] metagenome; hydrothermal vent
146
219
+
Lys
CTT
[ENA]
¢þ
>WENV181206401
OFAU01002921
[OFAU] metagenome; hydrothermal vent
170
81
-
Ser
TGA
[ENA]
¢þ
>WENV181206425
OFAU01006469
[OFAU] metagenome; hydrothermal vent
182
257
+
Ala
TGC
[ENA]
¢þ
>WENV181206390
OFAU01001535
[OFAU] metagenome; hydrothermal vent
183
258
+
Thr
TGT
[ENA]
¢þ
>WENV181206397
OFAU01002088
[OFAU] metagenome; hydrothermal vent
218
131
-
Ser
GGA
[ENA]
¢þ
>WENV181206427
OFAU01006770
[OFAU] metagenome; hydrothermal vent
218
291
+
Ala
GGC
[ENA]
¢þ
>WENV181206405
OFAU01003424
[OFAU] metagenome; hydrothermal vent
218
294
+
Ala
TGC
[ENA]
¢þ
>WENV181206377
OFAU01000329
[OFAU] metagenome; hydrothermal vent
225
299
+
Gln
TTG
[ENA]
¢þ
>WENV181206400
OFAU01002741
[OFAU] metagenome; hydrothermal vent
227
314
+
Ser
TGA
[ENA]
¢þ
>WENV181206429
OFAU01006878
[OFAU] metagenome; hydrothermal vent
244
326
+
Leu
TAG
[ENA]
¢þ
>WENV181206428
OFAU01006833
[OFAU] metagenome; hydrothermal vent
250
174
-
Ile2
CAT
[ENA]
¢þ
>WENV181206403
OFAU01003062
[OFAU] metagenome; hydrothermal vent
263
178
-
Leu
CAG
[ENA]
¢þ
>WENV181206402
OFAU01002999
[OFAU] metagenome; hydrothermal vent
278
367
+
Ser
CGA
[ENA]
¢þ
>WENV181206424
OFAU01006373
[OFAU] metagenome; hydrothermal vent
282
198
-
Leu
TAG
[ENA]
¢þ
>WENV181206374
OFAU01000325
[OFAU] metagenome; hydrothermal vent
283
202
-
Tyr
GTA
[ENA]
¢þ
>WENV181206423
OFAU01006293
[OFAU] metagenome; hydrothermal vent
291
216
-
Phe
GAA
[ENA]
¢þ
>WENV181206395
OFAU01001894
[OFAU] metagenome; hydrothermal vent
323
396
+
Glu
TTC
[ENA]
¢þ
>WENV181206399
OFAU01002642
[OFAU] metagenome; hydrothermal vent
323
398
+
Asn
GTT
[ENA]
¢þ
>WENV181206415
OFAU01004235
[OFAU] metagenome; hydrothermal vent
326
252
-
Arg
TCT
[ENA]
¢þ
>WENV181206380
OFAU01000377
[OFAU] metagenome; hydrothermal vent
356
285
-
Gln
TTG
[ENA]
¢þ
>WENV181206384
OFAU01000813
[OFAU] metagenome; hydrothermal vent
357
431
+
Asp
GTC
[ENA]
¢þ
>WENV181206426
OFAU01006469
[OFAU] metagenome; hydrothermal vent
361
437
+
Asp
GTC
[ENA]
¢þ
>WENV181206373
OFAU01000325
[OFAU] metagenome; hydrothermal vent
375
301
-
Thr
TGT
[ENA]
¢þ
>WENV181206421
OFAU01006066
[OFAU] metagenome; hydrothermal vent
383
458
+
Ile2
CAT
[ENA]
¢þ
>WENV181206412
OFAU01003985
[OFAU] metagenome; hydrothermal vent
384
310
-
Ile
GAT
[ENA]
¢þ
>WENV181206389
OFAU01001296
[OFAU] metagenome; hydrothermal vent
416
498
+
Tyr
GTA
[ENA]
¢þ
>WENV181206368
OFAU01000179
[OFAU] metagenome; hydrothermal vent
421
495
+
Asn
GTT
[ENA]
¢þ
>WENV181206378
OFAU01000329
[OFAU] metagenome; hydrothermal vent
422
497
+
Ala
TGC
[ENA]
¢þ
>WENV181206414
OFAU01004235
[OFAU] metagenome; hydrothermal vent
444
369
-
Pro
TGG
[ENA]
¢þ
>WENV181206406
OFAU01003607
[OFAU] metagenome; hydrothermal vent
454
380
-
Gln
TTG
[ENA]
¢þ
>WENV181206391
OFAU01001551
[OFAU] metagenome; hydrothermal vent
458
544
+
Leu
CAA
[ENA]
¢þ
>WENV181206411
OFAU01003985
[OFAU] metagenome; hydrothermal vent
466
390
-
Asp
GTC
[ENA]
¢þ
>WENV181206408
OFAU01003761
[OFAU] metagenome; hydrothermal vent
470
398
-
Ala
TGC
[ENA]
¢þ
>WENV181206387
OFAU01000955
[OFAU] metagenome; hydrothermal vent
476
400
-
Pro
CGG
[ENA]
¢þ
>WENV181206394
OFAU01001879
[OFAU] metagenome; hydrothermal vent
478
567
+
Ser
CGA
[ENA]
¢þ
>WENV181206422
OFAU01006161
[OFAU] metagenome; hydrothermal vent
488
414
-
Met
CAT
[ENA]
¢þ
>WENV181206409
OFAU01003946
[OFAU] metagenome; hydrothermal vent
501
425
-
fMet
CAT
[ENA]
¢þ
>WENV181206393
OFAU01001860
[OFAU] metagenome; hydrothermal vent
521
445
-
Arg
ACG
[ENA]
¢þ
>WENV181206379
OFAU01000329
[OFAU] metagenome; hydrothermal vent
526
602
+
Ile
GAT
[ENA]
¢þ
>WENV181206417
OFAU01004610
[OFAU] metagenome; hydrothermal vent
531
459
-
Asn
GTT
[ENA]
¢þ
>WENV181206364
OFAU01000076
[OFAU] metagenome; hydrothermal vent
542
618
+
Ile
GAT
[ENA]
¢þ
>WENV181206416
OFAU01004524
[OFAU] metagenome; hydrothermal vent
544
469
-
Glu
CTC
[ENA]
¢þ
>WENV181206410
OFAU01003985
[OFAU] metagenome; hydrothermal vent
571
495
-
Asp
GTC
[ENA]
¢þ
>WENV181206407
OFAU01003761
[OFAU] metagenome; hydrothermal vent
573
497
-
Ile
GAT
[ENA]
¢þ
>WENV181206398
OFAU01002390
[OFAU] metagenome; hydrothermal vent
585
669
+
Ser
TGA
[ENA]
¢þ
>WENV181206388
OFAU01000999
[OFAU] metagenome; hydrothermal vent
590
665
+
Glu
TTC
[ENA]
¢þ
>WENV181206386
OFAU01000951
[OFAU] metagenome; hydrothermal vent
592
498
-
SeC
TCA
[ENA]
¢þ
>WENV181206392
OFAU01001860
[OFAU] metagenome; hydrothermal vent
626
537
-
Ser
GCT
[ENA]
¢þ
>WENV181206382
OFAU01000623
[OFAU] metagenome; hydrothermal vent
642
567
-
His
GTG
[ENA]
¢þ
>WENV181206369
OFAU01000202
[OFAU] metagenome; hydrothermal vent
646
721
+
Gly
GCC
[ENA]
¢þ
>WENV181206365
OFAU01000076
[OFAU] metagenome; hydrothermal vent
655
730
+
Ala
TGC
[ENA]
¢þ
>WENV181206370
OFAU01000208
[OFAU] metagenome; hydrothermal vent
961
1047
+
Leu
TAA
[ENA]
¢þ
>WENV181206381
OFAU01000380
[OFAU] metagenome; hydrothermal vent
989
1062
+
Phe
GAA
[ENA]
¢þ
>WENV181206371
OFAU01000278
[OFAU] metagenome; hydrothermal vent
1248
1175
-
Lys
TTT
[ENA]
¢þ
>WENV181206367
OFAU01000083
[OFAU] metagenome; hydrothermal vent
1717
1642
-
Thr
GGT
[ENA]
¢þ
>WENV181206366
OFAU01000083
[OFAU] metagenome; hydrothermal vent
1798
1724
-
Gly
TCC
[ENA]
¢þ
>WENV181206363
OFAU01000013
[OFAU] metagenome; hydrothermal vent
2152
2227
+
Glu
TTC
[ENA]
¢þ
>WENV181206362
OFAU01000009
[OFAU] metagenome; hydrothermal vent
4379
4305
-
Ala
TGC
[ENA]
¢þ
>WENV181206361
OFAU01000009
[OFAU] metagenome; hydrothermal vent
4536
4462
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK