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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OFAV] metagenome; hydrothermal vent
HIT:
69 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181206492
OFAV01005784
[OFAV] metagenome; hydrothermal vent
11
85
+
Asn
GTT
[ENA]
¢þ
>WENV181206465
OFAV01002115
[OFAV] metagenome; hydrothermal vent
47
131
+
Tyr
GTA
[ENA]
¢þ
>WENV181206452
OFAV01001465
[OFAV] metagenome; hydrothermal vent
65
138
+
Thr
GGT
[ENA]
¢þ
>WENV181206460
OFAV01001749
[OFAV] metagenome; hydrothermal vent
73
148
+
Ala
GGC
[ENA]
¢þ
>WENV181206496
OFAV01007058
[OFAV] metagenome; hydrothermal vent
85
158
+
Cys
GCA
[ENA]
¢þ
>WENV181206463
OFAV01001794
[OFAV] metagenome; hydrothermal vent
94
169
+
Val
TAC
[ENA]
¢þ
>WENV181206449
OFAV01001405
[OFAV] metagenome; hydrothermal vent
98
171
+
Gly
CCC
[ENA]
¢þ
>WENV181206488
OFAV01004910
[OFAV] metagenome; hydrothermal vent
107
189
+
Tyr
GTA
[ENA]
¢þ
>WENV181206436
OFAV01000319
[OFAV] metagenome; hydrothermal vent
118
191
+
Lys
TTT
[ENA]
¢þ
>WENV181206470
OFAV01002323
[OFAV] metagenome; hydrothermal vent
121
196
+
Thr
CGT
[ENA]
¢þ
>WENV181206441
OFAV01000727
[OFAV] metagenome; hydrothermal vent
125
201
+
Arg
CCG
[ENA]
¢þ
>WENV181206486
OFAV01003886
[OFAV] metagenome; hydrothermal vent
131
207
+
fMet
CAT
[ENA]
¢þ
>WENV181206453
OFAV01001465
[OFAV] metagenome; hydrothermal vent
142
216
+
Met
CAT
[ENA]
¢þ
>WENV181206485
OFAV01003807
[OFAV] metagenome; hydrothermal vent
148
219
+
Gln
TTG
[ENA]
¢þ
>WENV181206479
OFAV01002596
[OFAV] metagenome; hydrothermal vent
148
236
+
Ser
TGA
[ENA]
¢þ
>WENV181206466
OFAV01002115
[OFAV] metagenome; hydrothermal vent
167
251
+
Tyr
GTA
[ENA]
¢þ
>WENV181206487
OFAV01004727
[OFAV] metagenome; hydrothermal vent
168
94
-
Asn
GTT
[ENA]
¢þ
>WENV181206497
OFAV01007058
[OFAV] metagenome; hydrothermal vent
170
256
+
Leu
TAA
[ENA]
¢þ
>WENV181206461
OFAV01001749
[OFAV] metagenome; hydrothermal vent
174
249
+
Glu
TTC
[ENA]
¢þ
>WENV181206440
OFAV01000668
[OFAV] metagenome; hydrothermal vent
176
90
-
Leu
TAA
[ENA]
¢þ
>WENV181206469
OFAV01002170
[OFAV] metagenome; hydrothermal vent
179
273
+
SeC
TCA
[ENA]
¢þ
>WENV181206489
OFAV01005175
[OFAV] metagenome; hydrothermal vent
220
145
-
Asn
GTT
[ENA]
¢þ
>WENV181206494
OFAV01007006
[OFAV] metagenome; hydrothermal vent
261
337
+
Met
CAT
[ENA]
¢þ
>WENV181206491
OFAV01005427
[OFAV] metagenome; hydrothermal vent
263
337
+
Asp
GTC
[ENA]
¢þ
>WENV181206481
OFAV01003193
[OFAV] metagenome; hydrothermal vent
277
202
-
Phe
GAA
[ENA]
¢þ
>WENV181206483
OFAV01003582
[OFAV] metagenome; hydrothermal vent
277
353
+
Ala
TGC
[ENA]
¢þ
>WENV181206477
OFAV01002527
[OFAV] metagenome; hydrothermal vent
280
354
+
Gln
TTG
[ENA]
¢þ
>WENV181206459
OFAV01001717
[OFAV] metagenome; hydrothermal vent
311
235
-
Pro
TGG
[ENA]
¢þ
>WENV181206493
OFAV01006260
[OFAV] metagenome; hydrothermal vent
311
236
-
Pro
TGG
[ENA]
¢þ
>WENV181206476
OFAV01002510
[OFAV] metagenome; hydrothermal vent
323
396
+
Glu
TTC
[ENA]
¢þ
>WENV181206451
OFAV01001410
[OFAV] metagenome; hydrothermal vent
331
257
-
Lys
TTT
[ENA]
¢þ
>WENV181206495
OFAV01007006
[OFAV] metagenome; hydrothermal vent
346
430
+
Leu
TAG
[ENA]
¢þ
>WENV181206442
OFAV01000727
[OFAV] metagenome; hydrothermal vent
349
425
+
Pro
TGG
[ENA]
¢þ
>WENV181206462
OFAV01001776
[OFAV] metagenome; hydrothermal vent
355
430
+
Ala
CGC
[ENA]
¢þ
>WENV181206467
OFAV01002115
[OFAV] metagenome; hydrothermal vent
369
443
+
Gly
TCC
[ENA]
¢þ
>WENV181206482
OFAV01003549
[OFAV] metagenome; hydrothermal vent
401
477
+
Arg
CCG
[ENA]
¢þ
>WENV181206498
OFAV01007191
[OFAV] metagenome; hydrothermal vent
410
324
-
Leu
CAA
[ENA]
¢þ
>WENV181206450
OFAV01001410
[OFAV] metagenome; hydrothermal vent
413
338
-
Lys
TTT
[ENA]
¢þ
>WENV181206490
OFAV01005218
[OFAV] metagenome; hydrothermal vent
416
332
-
Leu
CAA
[ENA]
¢þ
>WENV181206499
OFAV01007245
[OFAV] metagenome; hydrothermal vent
419
343
-
Pro
GGG
[ENA]
¢þ
>WENV181206468
OFAV01002115
[OFAV] metagenome; hydrothermal vent
450
525
+
Thr
GGT
[ENA]
¢þ
>WENV181206480
OFAV01003016
[OFAV] metagenome; hydrothermal vent
455
544
+
Ser
TGA
[ENA]
¢þ
>WENV181206473
OFAV01002459
[OFAV] metagenome; hydrothermal vent
458
544
+
Leu
CAA
[ENA]
¢þ
>WENV181206454
OFAV01001647
[OFAV] metagenome; hydrothermal vent
478
567
+
Ser
CGA
[ENA]
¢þ
>WENV181206443
OFAV01000863
[OFAV] metagenome; hydrothermal vent
480
553
+
Phe
GAA
[ENA]
¢þ
>WENV181206484
OFAV01003710
[OFAV] metagenome; hydrothermal vent
495
574
+
Gln
TTG
[ENA]
¢þ
>WENV181206456
OFAV01001668
[OFAV] metagenome; hydrothermal vent
504
429
-
Ala
TGC
[ENA]
¢þ
>WENV181206458
OFAV01001691
[OFAV] metagenome; hydrothermal vent
544
469
-
Glu
CTC
[ENA]
¢þ
>WENV181206475
OFAV01002466
[OFAV] metagenome; hydrothermal vent
570
485
-
Leu
GAG
[ENA]
¢þ
>WENV181206478
OFAV01002552
[OFAV] metagenome; hydrothermal vent
594
679
+
Ser
TGA
[ENA]
¢þ
>WENV181206455
OFAV01001668
[OFAV] metagenome; hydrothermal vent
616
540
-
Ile
GAT
[ENA]
¢þ
>WENV181206448
OFAV01001159
[OFAV] metagenome; hydrothermal vent
619
694
+
Thr
TGT
[ENA]
¢þ
>WENV181206447
OFAV01001157
[OFAV] metagenome; hydrothermal vent
627
551
-
Val
GAC
[ENA]
¢þ
>WENV181206437
OFAV01000390
[OFAV] metagenome; hydrothermal vent
627
553
-
Met
CAT
[ENA]
¢þ
>WENV181206444
OFAV01000868
[OFAV] metagenome; hydrothermal vent
635
711
+
Pro
CGG
[ENA]
¢þ
>WENV181206435
OFAV01000228
[OFAV] metagenome; hydrothermal vent
646
721
+
Gly
GCC
[ENA]
¢þ
>WENV181206446
OFAV01001045
[OFAV] metagenome; hydrothermal vent
662
591
-
Gln
TTG
[ENA]
¢þ
>WENV181206472
OFAV01002365
[OFAV] metagenome; hydrothermal vent
665
590
-
Thr
TGT
[ENA]
¢þ
>WENV181206457
OFAV01001691
[OFAV] metagenome; hydrothermal vent
702
630
-
Gln
CTG
[ENA]
¢þ
>WENV181206474
OFAV01002462
[OFAV] metagenome; hydrothermal vent
712
637
-
His
GTG
[ENA]
¢þ
>WENV181206464
OFAV01001859
[OFAV] metagenome; hydrothermal vent
747
671
-
Ile
GAT
[ENA]
¢þ
>WENV181206471
OFAV01002365
[OFAV] metagenome; hydrothermal vent
747
673
-
Phe
GAA
[ENA]
¢þ
>WENV181206445
OFAV01000868
[OFAV] metagenome; hydrothermal vent
900
975
+
Val
TAC
[ENA]
¢þ
>WENV181206439
OFAV01000593
[OFAV] metagenome; hydrothermal vent
954
878
-
Arg
ACG
[ENA]
¢þ
>WENV181206438
OFAV01000548
[OFAV] metagenome; hydrothermal vent
1044
1120
+
Met
CAT
[ENA]
¢þ
>WENV181206433
OFAV01000104
[OFAV] metagenome; hydrothermal vent
1065
1139
+
Ile2
CAT
[ENA]
¢þ
>WENV181206434
OFAV01000172
[OFAV] metagenome; hydrothermal vent
1439
1364
-
Glu
TTC
[ENA]
¢þ
>WENV181206432
OFAV01000010
[OFAV] metagenome; hydrothermal vent
3861
3787
-
Ala
TGC
[ENA]
¢þ
>WENV181206431
OFAV01000010
[OFAV] metagenome; hydrothermal vent
4018
3944
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK