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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OFEV] coral metagenome; NA
HIT:
132 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181234836
OFEV01007998
[OFEV] coral metagenome; NA
1
73
+
Glu
TTC
[ENA]
¢þ
>WENV181234908
OFEV01107390
[OFEV] coral metagenome; NA
10
85
+
Thr
TGT
[ENA]
¢þ
>WENV181234904
OFEV01095025
[OFEV] coral metagenome; NA
28
100
+
Asn
GTT
[ENA]
¢þ
>WENV181234894
OFEV01085288
[OFEV] coral metagenome; NA
32
109
+
Ser
TGA
[ENA]
¢þ
>WENV181234917
OFEV01129966
[OFEV] coral metagenome; NA
77
5
-
Arg
CCT
[ENA]
¢þ
>WENV181234926
OFEV01146397
[OFEV] coral metagenome; NA
78
3
-
Thr
TGT
[ENA]
¢þ
>WENV181234919
OFEV01136396
[OFEV] coral metagenome; NA
79
7
-
Pro
AGG
[ENA]
¢þ
>WENV181234901
OFEV01093574
[OFEV] coral metagenome; NA
83
10
-
His
GTG
[ENA]
¢þ
>WENV181234893
OFEV01082988
[OFEV] coral metagenome; NA
86
13
-
Arg
TCG
[ENA]
¢þ
>WENV181234873
OFEV01037183
[OFEV] coral metagenome; NA
95
168
+
Thr
GGT
[ENA]
¢þ
>WENV181234927
OFEV01146657
[OFEV] coral metagenome; NA
100
28
-
Ile
GAT
[ENA]
¢þ
>WENV181234868
OFEV01030554
[OFEV] coral metagenome; NA
103
16
-
Met
CAT
[ENA]
¢þ
>WENV181234910
OFEV01113703
[OFEV] coral metagenome; NA
105
176
+
Pro
CGG
[ENA]
¢þ
>WENV181234881
OFEV01049181
[OFEV] coral metagenome; NA
108
27
-
Leu
AAG
[ENA]
¢þ
>WENV181234921
OFEV01139981
[OFEV] coral metagenome; NA
127
200
+
Lys
TTT
[ENA]
¢þ
>WENV181234924
OFEV01143852
[OFEV] coral metagenome; NA
133
62
-
Asp
GTC
[ENA]
¢þ
>WENV181234863
OFEV01021957
[OFEV] coral metagenome; NA
134
63
-
Glu
CTC
[ENA]
¢þ
>WENV181234922
OFEV01142804
[OFEV] coral metagenome; NA
142
223
+
Ser
CGA
[ENA]
¢þ
>WENV181234898
OFEV01092385
[OFEV] coral metagenome; NA
147
72
-
Cys
GCA
[ENA]
¢þ
>WENV181234890
OFEV01069528
[OFEV] coral metagenome; NA
165
94
-
His
GTG
[ENA]
¢þ
>WENV181234906
OFEV01102299
[OFEV] coral metagenome; NA
181
108
-
Cys
GCA
[ENA]
¢þ
>WENV181234855
OFEV01015876
[OFEV] coral metagenome; NA
181
253
+
Ala
GGC
[ENA]
¢þ
>WENV181234878
OFEV01042948
[OFEV] coral metagenome; NA
206
289
+
Ser
TGA
[ENA]
¢þ
>WENV181234895
OFEV01087974
[OFEV] coral metagenome; NA
220
292
+
Arg
TCG
[ENA]
¢þ
>WENV181234915
OFEV01124418
[OFEV] coral metagenome; NA
224
149
-
Arg
CCT
[ENA]
¢þ
>WENV181234916
OFEV01126614
[OFEV] coral metagenome; NA
224
300
+
Val
TAC
[ENA]
¢þ
>WENV181234928
OFEV01151260
[OFEV] coral metagenome; NA
225
296
+
Glu
CTC
[ENA]
¢þ
>WENV181234900
OFEV01093574
[OFEV] coral metagenome; NA
230
301
+
Asp
GTC
[ENA]
¢þ
>WENV181234930
OFEV01157099
[OFEV] coral metagenome; NA
232
305
+
Pro
AGG
[ENA]
¢þ
>WENV181234886
OFEV01066838
[OFEV] coral metagenome; NA
234
151
-
Leu
TAA
[ENA]
¢þ
>WENV181234933
OFEV01168989
[OFEV] coral metagenome; NA
245
320
+
Thr
CGT
[ENA]
¢þ
>WENV181234869
OFEV01030952
[OFEV] coral metagenome; NA
269
197
-
Thr
GGT
[ENA]
¢þ
>WENV181234929
OFEV01155356
[OFEV] coral metagenome; NA
269
353
+
Leu
CAG
[ENA]
¢þ
>WENV181234848
OFEV01014126
[OFEV] coral metagenome; NA
279
351
+
Glu
TTC
[ENA]
¢þ
>WENV181234918
OFEV01133642
[OFEV] coral metagenome; NA
284
202
-
Leu
TAG
[ENA]
¢þ
>WENV181234932
OFEV01167077
[OFEV] coral metagenome; NA
297
368
+
Asp
GTC
[ENA]
¢þ
>WENV181234925
OFEV01143881
[OFEV] coral metagenome; NA
313
230
-
Leu
TAA
[ENA]
¢þ
>WENV181234902
OFEV01094640
[OFEV] coral metagenome; NA
328
402
+
Thr
AGT
[ENA]
¢þ
>WENV181234884
OFEV01057245
[OFEV] coral metagenome; NA
337
266
-
Glu
TTC
[ENA]
¢þ
>WENV181234840
OFEV01010111
[OFEV] coral metagenome; NA
361
288
-
Lys
CTT
[ENA]
¢þ
>WENV181234899
OFEV01093555
[OFEV] coral metagenome; NA
369
450
+
Ser
CGA
[ENA]
¢þ
>WENV181234912
OFEV01113997
[OFEV] coral metagenome; NA
378
306
-
Gly
TCC
[ENA]
¢þ
>WENV181234920
OFEV01137947
[OFEV] coral metagenome; NA
391
316
-
Ile
GAT
[ENA]
¢þ
>WENV181234913
OFEV01115318
[OFEV] coral metagenome; NA
404
475
+
Pro
AGG
[ENA]
¢þ
>WENV181234931
OFEV01158356
[OFEV] coral metagenome; NA
410
339
-
Gly
CCC
[ENA]
¢þ
>WENV181234867
OFEV01030554
[OFEV] coral metagenome; NA
410
484
+
Lys
TTT
[ENA]
¢þ
>WENV181234872
OFEV01034667
[OFEV] coral metagenome; NA
424
505
+
Ser
CGA
[ENA]
¢þ
>WENV181234887
OFEV01068231
[OFEV] coral metagenome; NA
426
500
+
His
ATG
[ENA]
¢þ
>WENV181234891
OFEV01076410
[OFEV] coral metagenome; NA
472
386
-
Met
CAT
[ENA]
¢þ
>WENV181234897
OFEV01091524
[OFEV] coral metagenome; NA
478
405
-
Thr
CGT
[ENA]
¢þ
>WENV181234909
OFEV01112442
[OFEV] coral metagenome; NA
487
558
+
His
GTG
[ENA]
¢þ
>WENV181234914
OFEV01121897
[OFEV] coral metagenome; NA
511
439
-
Val
AAC
[ENA]
¢þ
>WENV181234923
OFEV01143852
[OFEV] coral metagenome; NA
533
606
+
Asn
GTT
[ENA]
¢þ
>WENV181234866
OFEV01029241
[OFEV] coral metagenome; NA
553
472
-
Ser
TGA
[ENA]
¢þ
>WENV181234847
OFEV01013793
[OFEV] coral metagenome; NA
554
628
+
Thr
CGT
[ENA]
¢þ
>WENV181234838
OFEV01008744
[OFEV] coral metagenome; NA
562
491
-
Pro
TGG
[ENA]
¢þ
>WENV181234870
OFEV01032398
[OFEV] coral metagenome; NA
577
652
+
Arg
TCG
[ENA]
¢þ
>WENV181234875
OFEV01040344
[OFEV] coral metagenome; NA
582
499
-
Leu
CAG
[ENA]
¢þ
>WENV181234889
OFEV01069528
[OFEV] coral metagenome; NA
604
675
+
His
GTG
[ENA]
¢þ
>WENV181234879
OFEV01043023
[OFEV] coral metagenome; NA
624
542
-
Leu
TAG
[ENA]
¢þ
>WENV181234804
OFEV01000952
[OFEV] coral metagenome; NA
624
695
+
Pro
AGG
[ENA]
¢þ
>WENV181234911
OFEV01113703
[OFEV] coral metagenome; NA
635
563
-
Ile
GAT
[ENA]
¢þ
>WENV181234907
OFEV01102715
[OFEV] coral metagenome; NA
640
723
+
Leu
CAG
[ENA]
¢þ
>WENV181234861
OFEV01021729
[OFEV] coral metagenome; NA
650
720
+
Gly
GCC
[ENA]
¢þ
>WENV181234845
OFEV01011518
[OFEV] coral metagenome; NA
651
577
-
Met
CAT
[ENA]
¢þ
>WENV181234858
OFEV01020808
[OFEV] coral metagenome; NA
652
733
+
Ser
TGA
[ENA]
¢þ
>WENV181234821
OFEV01003764
[OFEV] coral metagenome; NA
657
730
+
Gln
CTG
[ENA]
¢þ
>WENV181234905
OFEV01096286
[OFEV] coral metagenome; NA
685
759
+
Thr
GGT
[ENA]
¢þ
>WENV181234903
OFEV01094640
[OFEV] coral metagenome; NA
687
761
+
Thr
AGT
[ENA]
¢þ
>WENV181234856
OFEV01016887
[OFEV] coral metagenome; NA
713
642
-
His
GTG
[ENA]
¢þ
>WENV181234876
OFEV01040906
[OFEV] coral metagenome; NA
718
793
+
Thr
TGT
[ENA]
¢þ
>WENV181234837
OFEV01007998
[OFEV] coral metagenome; NA
731
802
+
Glu
TTC
[ENA]
¢þ
>WENV181234896
OFEV01091430
[OFEV] coral metagenome; NA
748
820
+
Thr
GGT
[ENA]
¢þ
>WENV181234826
OFEV01004019
[OFEV] coral metagenome; NA
768
685
-
Leu
AAG
[ENA]
¢þ
>WENV181234888
OFEV01068638
[OFEV] coral metagenome; NA
778
852
+
Thr
GGT
[ENA]
¢þ
>WENV181234864
OFEV01022240
[OFEV] coral metagenome; NA
794
718
-
Asn
GTT
[ENA]
¢þ
>WENV181234885
OFEV01059874
[OFEV] coral metagenome; NA
810
884
+
Arg
TCG
[ENA]
¢þ
>WENV181234892
OFEV01076899
[OFEV] coral metagenome; NA
835
906
+
Gln
TTG
[ENA]
¢þ
>WENV181234874
OFEV01038850
[OFEV] coral metagenome; NA
840
915
+
Lys
TTT
[ENA]
¢þ
>WENV181234844
OFEV01010925
[OFEV] coral metagenome; NA
856
785
-
His
GTG
[ENA]
¢þ
>WENV181234854
OFEV01015660
[OFEV] coral metagenome; NA
932
1004
+
Thr
GGT
[ENA]
¢þ
>WENV181234842
OFEV01010206
[OFEV] coral metagenome; NA
933
1006
+
Lys
CTT
[ENA]
¢þ
>WENV181234843
OFEV01010910
[OFEV] coral metagenome; NA
944
1016
+
Glu
TTC
[ENA]
¢þ
>WENV181234865
OFEV01023489
[OFEV] coral metagenome; NA
950
1024
+
Thr
TGT
[ENA]
¢þ
>WENV181234860
OFEV01021060
[OFEV] coral metagenome; NA
957
882
-
Thr
CGT
[ENA]
¢þ
>WENV181234857
OFEV01018679
[OFEV] coral metagenome; NA
963
1035
+
Thr
TGT
[ENA]
¢þ
>WENV181234812
OFEV01001707
[OFEV] coral metagenome; NA
986
1058
+
Pro
CGG
[ENA]
¢þ
>WENV181234883
OFEV01052383
[OFEV] coral metagenome; NA
998
924
-
Thr
CGT
[ENA]
¢þ
>WENV181234877
OFEV01042859
[OFEV] coral metagenome; NA
1000
1072
+
Val
TAC
[ENA]
¢þ
>WENV181234850
OFEV01014452
[OFEV] coral metagenome; NA
1018
1090
+
Val
CAC
[ENA]
¢þ
>WENV181234849
OFEV01014126
[OFEV] coral metagenome; NA
1058
984
-
Thr
TGT
[ENA]
¢þ
>WENV181234846
OFEV01013039
[OFEV] coral metagenome; NA
1101
1174
+
Lys
CTT
[ENA]
¢þ
>WENV181234841
OFEV01010201
[OFEV] coral metagenome; NA
1114
1186
+
Val
CAC
[ENA]
¢þ
>WENV181234880
OFEV01045926
[OFEV] coral metagenome; NA
1126
1198
+
Arg
TCG
[ENA]
¢þ
>WENV181234882
OFEV01050093
[OFEV] coral metagenome; NA
1156
1069
-
Met
CAT
[ENA]
¢þ
>WENV181234862
OFEV01021729
[OFEV] coral metagenome; NA
1164
1234
+
Gly
GCC
[ENA]
¢þ
>WENV181234830
OFEV01006373
[OFEV] coral metagenome; NA
1198
1126
-
Trp
CCA
[ENA]
¢þ
>WENV181234822
OFEV01003764
[OFEV] coral metagenome; NA
1218
1289
+
Gly
TCC
[ENA]
¢þ
>WENV181234818
OFEV01002667
[OFEV] coral metagenome; NA
1261
1344
+
Ser
GCT
[ENA]
¢þ
>WENV181234859
OFEV01021060
[OFEV] coral metagenome; NA
1264
1189
-
Thr
TGT
[ENA]
¢þ
>WENV181234852
OFEV01014633
[OFEV] coral metagenome; NA
1320
1248
-
Arg
CCT
[ENA]
¢þ
>WENV181234828
OFEV01005314
[OFEV] coral metagenome; NA
1335
1263
-
Thr
GGT
[ENA]
¢þ
>WENV181234831
OFEV01006519
[OFEV] coral metagenome; NA
1346
1420
+
Met
CAT
[ENA]
¢þ
>WENV181234823
OFEV01003764
[OFEV] coral metagenome; NA
1375
1446
+
Gly
TCC
[ENA]
¢þ
>WENV181234871
OFEV01032733
[OFEV] coral metagenome; NA
1400
1329
-
Glu
TTC
[ENA]
¢þ
>WENV181234809
OFEV01001455
[OFEV] coral metagenome; NA
1414
1486
+
Met
CAT
[ENA]
¢þ
>WENV181234825
OFEV01004019
[OFEV] coral metagenome; NA
1437
1354
-
Leu
TAG
[ENA]
¢þ
>WENV181234835
OFEV01007908
[OFEV] coral metagenome; NA
1526
1600
+
His
GTG
[ENA]
¢þ
>WENV181234820
OFEV01003097
[OFEV] coral metagenome; NA
1596
1524
-
Val
CAC
[ENA]
¢þ
>WENV181234834
OFEV01007796
[OFEV] coral metagenome; NA
1681
1754
+
Arg
TCG
[ENA]
¢þ
>WENV181234853
OFEV01014788
[OFEV] coral metagenome; NA
1684
1756
+
Arg
CCG
[ENA]
¢þ
>WENV181234833
OFEV01007746
[OFEV] coral metagenome; NA
1726
1643
-
Leu
TAA
[ENA]
¢þ
>WENV181234832
OFEV01007004
[OFEV] coral metagenome; NA
1869
1942
+
Gln
TTG
[ENA]
¢þ
>WENV181234829
OFEV01006373
[OFEV] coral metagenome; NA
1925
1854
-
Trp
CCA
[ENA]
¢þ
>WENV181234851
OFEV01014452
[OFEV] coral metagenome; NA
2011
1938
-
Ile
GAT
[ENA]
¢þ
>WENV181234805
OFEV01000952
[OFEV] coral metagenome; NA
2041
2113
+
Pro
TGG
[ENA]
¢þ
>WENV181234807
OFEV01001199
[OFEV] coral metagenome; NA
2159
2235
+
Ile
GAT
[ENA]
¢þ
>WENV181234824
OFEV01003764
[OFEV] coral metagenome; NA
2225
2152
-
Gln
TTG
[ENA]
¢þ
>WENV181234808
OFEV01001199
[OFEV] coral metagenome; NA
2336
2411
+
Ala
TGC
[ENA]
¢þ
>WENV181234827
OFEV01004302
[OFEV] coral metagenome; NA
2355
2438
+
Leu
CAG
[ENA]
¢þ
>WENV181234839
OFEV01008869
[OFEV] coral metagenome; NA
2374
2447
+
Arg
TCG
[ENA]
¢þ
>WENV181234815
OFEV01002072
[OFEV] coral metagenome; NA
2578
2659
+
Ser
TGA
[ENA]
¢þ
>WENV181234802
OFEV01000792
[OFEV] coral metagenome; NA
2752
2824
+
Pro
AGG
[ENA]
¢þ
>WENV181234817
OFEV01002274
[OFEV] coral metagenome; NA
2957
2885
-
Pro
CGG
[ENA]
¢þ
>WENV181234814
OFEV01001971
[OFEV] coral metagenome; NA
3166
3095
-
Pro
CGG
[ENA]
¢þ
>WENV181234813
OFEV01001707
[OFEV] coral metagenome; NA
3311
3240
-
Glu
TTC
[ENA]
¢þ
>WENV181234819
OFEV01002956
[OFEV] coral metagenome; NA
3494
3422
-
Glu
CTC
[ENA]
¢þ
>WENV181234816
OFEV01002072
[OFEV] coral metagenome; NA
3532
3613
+
Ser
AGA
[ENA]
¢þ
>WENV181234810
OFEV01001604
[OFEV] coral metagenome; NA
3754
3827
+
Arg
ACG
[ENA]
¢þ
>WENV181234806
OFEV01000952
[OFEV] coral metagenome; NA
4024
4096
+
Pro
AGG
[ENA]
¢þ
>WENV181234811
OFEV01001604
[OFEV] coral metagenome; NA
4116
4190
+
Arg
ACG
[ENA]
¢þ
>WENV181234803
OFEV01000792
[OFEV] coral metagenome; NA
4548
4476
-
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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