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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OFIC] marine metagenome; sea ice
HIT:
66 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181304816
OFIC01009970
[OFIC] marine metagenome; sea ice
46
130
+
Tyr
GTA
[ENA]
¢þ
>WENV181304820
OFIC01013841
[OFIC] marine metagenome; sea ice
64
138
+
Ile
AAT
[ENA]
¢þ
>WENV181304812
OFIC01009133
[OFIC] marine metagenome; sea ice
101
174
+
Gly
TCC
[ENA]
¢þ
>WENV181304809
OFIC01007961
[OFIC] marine metagenome; sea ice
106
31
-
Thr
TGT
[ENA]
¢þ
>WENV181304795
OFIC01003343
[OFIC] marine metagenome; sea ice
124
211
+
Ser
GGA
[ENA]
¢þ
>WENV181304806
OFIC01007317
[OFIC] marine metagenome; sea ice
127
208
+
Ser
GCT
[ENA]
¢þ
>WENV181304817
OFIC01010644
[OFIC] marine metagenome; sea ice
131
205
+
Glu
CTC
[ENA]
¢þ
>WENV181304813
OFIC01009347
[OFIC] marine metagenome; sea ice
134
59
-
Trp
CCA
[ENA]
¢þ
>WENV181304821
OFIC01014396
[OFIC] marine metagenome; sea ice
150
75
-
Lys
TTT
[ENA]
¢þ
>WENV181304798
OFIC01003890
[OFIC] marine metagenome; sea ice
152
77
-
Ile2
CAT
[ENA]
¢þ
>WENV181304807
OFIC01007728
[OFIC] marine metagenome; sea ice
171
257
+
Ile2
CAT
[ENA]
¢þ
>WENV181304805
OFIC01007285
[OFIC] marine metagenome; sea ice
179
252
+
Lys
CTT
[ENA]
¢þ
>WENV181304822
OFIC01015803
[OFIC] marine metagenome; sea ice
184
258
+
Ala
GGC
[ENA]
¢þ
>WENV181304780
OFIC01002491
[OFIC] marine metagenome; sea ice
187
117
-
Gly
CCC
[ENA]
¢þ
>WENV181304785
OFIC01002545
[OFIC] marine metagenome; sea ice
224
151
-
Met
CAT
[ENA]
¢þ
>WENV181304791
OFIC01003027
[OFIC] marine metagenome; sea ice
227
151
-
Pro
TGG
[ENA]
¢þ
>WENV181304794
OFIC01003271
[OFIC] marine metagenome; sea ice
241
166
-
Ala
TGC
[ENA]
¢þ
>WENV181304773
OFIC01001415
[OFIC] marine metagenome; sea ice
246
319
+
Cys
GCA
[ENA]
¢þ
>WENV181304804
OFIC01006857
[OFIC] marine metagenome; sea ice
252
177
-
Asn
GTT
[ENA]
¢þ
>WENV181304808
OFIC01007911
[OFIC] marine metagenome; sea ice
264
340
+
Arg
ACG
[ENA]
¢þ
>WENV181304814
OFIC01009593
[OFIC] marine metagenome; sea ice
279
205
-
Gln
TTG
[ENA]
¢þ
>WENV181304815
OFIC01009858
[OFIC] marine metagenome; sea ice
303
227
-
Arg
TCT
[ENA]
¢þ
>WENV181304776
OFIC01001939
[OFIC] marine metagenome; sea ice
325
250
-
Asn
GTT
[ENA]
¢þ
>WENV181304771
OFIC01000917
[OFIC] marine metagenome; sea ice
343
419
+
Ile2
CAT
[ENA]
¢þ
>WENV181304777
OFIC01002170
[OFIC] marine metagenome; sea ice
351
277
-
Val
CAC
[ENA]
¢þ
>WENV181304811
OFIC01009030
[OFIC] marine metagenome; sea ice
362
434
+
Pro
AGG
[ENA]
¢þ
>WENV181304802
OFIC01005193
[OFIC] marine metagenome; sea ice
367
441
+
Val
GAC
[ENA]
¢þ
>WENV181304818
OFIC01012116
[OFIC] marine metagenome; sea ice
367
443
+
Arg
CCT
[ENA]
¢þ
>WENV181304793
OFIC01003271
[OFIC] marine metagenome; sea ice
373
297
-
Ile
GAT
[ENA]
¢þ
>WENV181304810
OFIC01008637
[OFIC] marine metagenome; sea ice
381
457
+
Asn
GTT
[ENA]
¢þ
>WENV181304800
OFIC01004465
[OFIC] marine metagenome; sea ice
396
322
-
Val
TAC
[ENA]
¢þ
>WENV181304779
OFIC01002491
[OFIC] marine metagenome; sea ice
403
321
-
Leu
TAA
[ENA]
¢þ
>WENV181304784
OFIC01002545
[OFIC] marine metagenome; sea ice
418
337
-
Leu
CAA
[ENA]
¢þ
>WENV181304772
OFIC01001375
[OFIC] marine metagenome; sea ice
430
357
-
Pro
TGG
[ENA]
¢þ
>WENV181304786
OFIC01002744
[OFIC] marine metagenome; sea ice
432
343
-
Ser
GCT
[ENA]
¢þ
>WENV181304761
OFIC01000204
[OFIC] marine metagenome; sea ice
439
363
-
Ile2
CAT
[ENA]
¢þ
>WENV181304819
OFIC01012371
[OFIC] marine metagenome; sea ice
449
523
+
Met
CAT
[ENA]
¢þ
>WENV181304801
OFIC01004629
[OFIC] marine metagenome; sea ice
454
527
+
fMet
CAT
[ENA]
¢þ
>WENV181304790
OFIC01002795
[OFIC] marine metagenome; sea ice
459
533
+
Thr
GGT
[ENA]
¢þ
>WENV181304796
OFIC01003379
[OFIC] marine metagenome; sea ice
476
402
-
Val
GAC
[ENA]
¢þ
>WENV181304792
OFIC01003271
[OFIC] marine metagenome; sea ice
496
421
-
Ala
TGC
[ENA]
¢þ
>WENV181304803
OFIC01005976
[OFIC] marine metagenome; sea ice
497
420
-
Pro
GGG
[ENA]
¢þ
>WENV181304774
OFIC01001540
[OFIC] marine metagenome; sea ice
520
446
-
Asn
GTT
[ENA]
¢þ
>WENV181304788
OFIC01002772
[OFIC] marine metagenome; sea ice
542
465
-
Asp
GTC
[ENA]
¢þ
>WENV181304770
OFIC01000878
[OFIC] marine metagenome; sea ice
542
467
-
Ala
TGC
[ENA]
¢þ
>WENV181304783
OFIC01002545
[OFIC] marine metagenome; sea ice
568
641
+
Cys
GCA
[ENA]
¢þ
>WENV181304775
OFIC01001587
[OFIC] marine metagenome; sea ice
570
481
-
Ser
GGA
[ENA]
¢þ
>WENV181304797
OFIC01003773
[OFIC] marine metagenome; sea ice
587
660
+
Gly
GCC
[ENA]
¢þ
>WENV181304767
OFIC01000812
[OFIC] marine metagenome; sea ice
603
523
-
Leu
AAG
[ENA]
¢þ
>WENV181304799
OFIC01003984
[OFIC] marine metagenome; sea ice
624
549
-
His
GTG
[ENA]
¢þ
>WENV181304787
OFIC01002772
[OFIC] marine metagenome; sea ice
637
561
-
Val
TAC
[ENA]
¢þ
>WENV181304778
OFIC01002341
[OFIC] marine metagenome; sea ice
652
576
-
Arg
TCT
[ENA]
¢þ
>WENV181304765
OFIC01000439
[OFIC] marine metagenome; sea ice
669
595
-
Gly
CCC
[ENA]
¢þ
>WENV181304781
OFIC01002494
[OFIC] marine metagenome; sea ice
674
749
+
Val
CAC
[ENA]
¢þ
>WENV181304769
OFIC01000878
[OFIC] marine metagenome; sea ice
684
610
-
Ile
GAT
[ENA]
¢þ
>WENV181304782
OFIC01002499
[OFIC] marine metagenome; sea ice
730
657
-
Gly
TCC
[ENA]
¢þ
>WENV181304789
OFIC01002794
[OFIC] marine metagenome; sea ice
742
669
-
His
GTG
[ENA]
¢þ
>WENV181304766
OFIC01000812
[OFIC] marine metagenome; sea ice
744
818
+
Arg
CCT
[ENA]
¢þ
>WENV181304763
OFIC01000371
[OFIC] marine metagenome; sea ice
791
705
-
Leu
CAG
[ENA]
¢þ
>WENV181304768
OFIC01000846
[OFIC] marine metagenome; sea ice
816
746
-
Gly
TCC
[ENA]
¢þ
>WENV181304764
OFIC01000439
[OFIC] marine metagenome; sea ice
829
747
-
Tyr
GTA
[ENA]
¢þ
>WENV181304762
OFIC01000255
[OFIC] marine metagenome; sea ice
911
838
-
Gln
CTG
[ENA]
¢þ
>WENV181304757
OFIC01000021
[OFIC] marine metagenome; sea ice
1500
1575
+
Ala
TGC
[ENA]
¢þ
>WENV181304758
OFIC01000021
[OFIC] marine metagenome; sea ice
1599
1675
+
Ile
GAT
[ENA]
¢þ
>WENV181304760
OFIC01000028
[OFIC] marine metagenome; sea ice
3698
3625
-
Ala
TGC
[ENA]
¢þ
>WENV181304759
OFIC01000028
[OFIC] marine metagenome; sea ice
3774
3701
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK