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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OFJM] marine metagenome; sea ice
HIT:
67 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181315106
OFJM01006339
[OFJM] marine metagenome; sea ice
13
102
+
Ser
CGA
[ENA]
¢þ
>WENV181315092
OFJM01003591
[OFJM] marine metagenome; sea ice
56
137
+
Trp
CCA
[ENA]
¢þ
>WENV181315075
OFJM01001031
[OFJM] marine metagenome; sea ice
77
150
+
Pro
TGG
[ENA]
¢þ
>WENV181315077
OFJM01001178
[OFJM] marine metagenome; sea ice
98
23
-
Ala
GGC
[ENA]
¢þ
>WENV181315070
OFJM01000635
[OFJM] marine metagenome; sea ice
140
229
+
Ser
CGA
[ENA]
¢þ
>WENV181315117
OFJM01012023
[OFJM] marine metagenome; sea ice
159
83
-
Val
GAC
[ENA]
¢þ
>WENV181315110
OFJM01006956
[OFJM] marine metagenome; sea ice
176
102
-
Thr
GGT
[ENA]
¢þ
>WENV181315089
OFJM01003125
[OFJM] marine metagenome; sea ice
191
110
-
Leu
TAG
[ENA]
¢þ
>WENV181315097
OFJM01005057
[OFJM] marine metagenome; sea ice
196
110
-
Leu
TAA
[ENA]
¢þ
>WENV181315115
OFJM01009421
[OFJM] marine metagenome; sea ice
212
131
-
Leu
TAG
[ENA]
¢þ
>WENV181315120
OFJM01012938
[OFJM] marine metagenome; sea ice
213
132
-
Tyr
GTA
[ENA]
¢þ
>WENV181315116
OFJM01009446
[OFJM] marine metagenome; sea ice
215
289
+
Arg
ACG
[ENA]
¢þ
>WENV181315114
OFJM01008771
[OFJM] marine metagenome; sea ice
219
137
-
Leu
CAG
[ENA]
¢þ
>WENV181315113
OFJM01007921
[OFJM] marine metagenome; sea ice
220
147
-
Gln
CTG
[ENA]
¢þ
>WENV181315095
OFJM01004490
[OFJM] marine metagenome; sea ice
220
309
+
Ser
TGA
[ENA]
¢þ
>WENV181315084
OFJM01002008
[OFJM] marine metagenome; sea ice
221
294
+
Gln
TTG
[ENA]
¢þ
>WENV181315079
OFJM01001491
[OFJM] marine metagenome; sea ice
240
166
-
Gly
GCC
[ENA]
¢þ
>WENV181315080
OFJM01001632
[OFJM] marine metagenome; sea ice
240
167
-
Glu
CTC
[ENA]
¢þ
>WENV181315105
OFJM01006098
[OFJM] marine metagenome; sea ice
247
172
-
Lys
CTT
[ENA]
¢þ
>WENV181315094
OFJM01004398
[OFJM] marine metagenome; sea ice
256
330
+
Gly
GCC
[ENA]
¢þ
>WENV181315091
OFJM01003360
[OFJM] marine metagenome; sea ice
260
346
+
Leu
CAG
[ENA]
¢þ
>WENV181315065
OFJM01000551
[OFJM] marine metagenome; sea ice
279
368
+
Ser
GCT
[ENA]
¢þ
>WENV181315109
OFJM01006829
[OFJM] marine metagenome; sea ice
287
199
-
Leu
CAG
[ENA]
¢þ
>WENV181315103
OFJM01005986
[OFJM] marine metagenome; sea ice
287
378
+
Ser
GCT
[ENA]
¢þ
>WENV181315069
OFJM01000612
[OFJM] marine metagenome; sea ice
293
219
-
Gln
CTG
[ENA]
¢þ
>WENV181315074
OFJM01000982
[OFJM] marine metagenome; sea ice
296
370
+
Thr
TGT
[ENA]
¢þ
>WENV181315083
OFJM01001886
[OFJM] marine metagenome; sea ice
332
407
+
Val
GAC
[ENA]
¢þ
>WENV181315122
OFJM01013809
[OFJM] marine metagenome; sea ice
346
270
-
Pro
GGG
[ENA]
¢þ
>WENV181315118
OFJM01012938
[OFJM] marine metagenome; sea ice
351
422
+
Val
TAC
[ENA]
¢þ
>WENV181315096
OFJM01005057
[OFJM] marine metagenome; sea ice
361
288
-
Cys
GCA
[ENA]
¢þ
>WENV181315072
OFJM01000849
[OFJM] marine metagenome; sea ice
361
445
+
Leu
TAG
[ENA]
¢þ
>WENV181315073
OFJM01000869
[OFJM] marine metagenome; sea ice
370
446
+
Met
CAT
[ENA]
¢þ
>WENV181315101
OFJM01005703
[OFJM] marine metagenome; sea ice
380
309
-
Gly
GCC
[ENA]
¢þ
>WENV181315085
OFJM01002265
[OFJM] marine metagenome; sea ice
384
460
+
fMet
CAT
[ENA]
¢þ
>WENV181315104
OFJM01006098
[OFJM] marine metagenome; sea ice
397
322
-
His
GTG
[ENA]
¢þ
>WENV181315121
OFJM01013391
[OFJM] marine metagenome; sea ice
397
479
+
Leu
TAA
[ENA]
¢þ
>WENV181315068
OFJM01000612
[OFJM] marine metagenome; sea ice
398
326
-
Met
CAT
[ENA]
¢þ
>WENV181315102
OFJM01005837
[OFJM] marine metagenome; sea ice
400
324
-
Met
CAT
[ENA]
¢þ
>WENV181315078
OFJM01001222
[OFJM] marine metagenome; sea ice
406
331
-
Asn
GTT
[ENA]
¢þ
>WENV181315087
OFJM01002450
[OFJM] marine metagenome; sea ice
414
487
+
Met
CAT
[ENA]
¢þ
>WENV181315100
OFJM01005526
[OFJM] marine metagenome; sea ice
421
347
-
Phe
GAA
[ENA]
¢þ
>WENV181315112
OFJM01007649
[OFJM] marine metagenome; sea ice
422
346
-
Arg
CCG
[ENA]
¢þ
>WENV181315119
OFJM01012938
[OFJM] marine metagenome; sea ice
433
505
+
Arg
TCT
[ENA]
¢þ
>WENV181315090
OFJM01003317
[OFJM] marine metagenome; sea ice
450
361
-
Ser
GCT
[ENA]
¢þ
>WENV181315111
OFJM01007157
[OFJM] marine metagenome; sea ice
455
530
+
Ser
CGA
[ENA]
¢þ
>WENV181315057
OFJM01000045
[OFJM] marine metagenome; sea ice
468
541
+
Ile
GAT
[ENA]
¢þ
>WENV181315076
OFJM01001135
[OFJM] marine metagenome; sea ice
477
553
+
Met
CAT
[ENA]
¢þ
>WENV181315123
OFJM01013821
[OFJM] marine metagenome; sea ice
485
412
-
Cys
GCA
[ENA]
¢þ
>WENV181315099
OFJM01005516
[OFJM] marine metagenome; sea ice
487
415
-
Thr
GGT
[ENA]
¢þ
>WENV181315086
OFJM01002353
[OFJM] marine metagenome; sea ice
491
416
-
Val
TAC
[ENA]
¢þ
>WENV181315107
OFJM01006450
[OFJM] marine metagenome; sea ice
502
577
+
Asn
GTT
[ENA]
¢þ
>WENV181315108
OFJM01006777
[OFJM] marine metagenome; sea ice
527
455
-
Arg
TCG
[ENA]
¢þ
>WENV181315093
OFJM01003859
[OFJM] marine metagenome; sea ice
532
608
+
Arg
CCT
[ENA]
¢þ
>WENV181315081
OFJM01001669
[OFJM] marine metagenome; sea ice
536
461
-
Trp
CCA
[ENA]
¢þ
>WENV181315058
OFJM01000045
[OFJM] marine metagenome; sea ice
544
617
+
Ala
TGC
[ENA]
¢þ
>WENV181315098
OFJM01005516
[OFJM] marine metagenome; sea ice
580
506
-
Gly
GCC
[ENA]
¢þ
>WENV181315071
OFJM01000739
[OFJM] marine metagenome; sea ice
585
660
+
Thr
CGT
[ENA]
¢þ
>WENV181315066
OFJM01000593
[OFJM] marine metagenome; sea ice
590
514
-
Arg
CCG
[ENA]
¢þ
>WENV181315088
OFJM01002450
[OFJM] marine metagenome; sea ice
596
668
+
Ile
TAT
[ENA]
¢þ
>WENV181315067
OFJM01000612
[OFJM] marine metagenome; sea ice
660
588
-
Val
CAC
[ENA]
¢þ
>WENV181315063
OFJM01000246
[OFJM] marine metagenome; sea ice
770
695
-
Ala
TGC
[ENA]
¢þ
>WENV181315082
OFJM01001841
[OFJM] marine metagenome; sea ice
817
744
-
His
GTG
[ENA]
¢þ
>WENV181315062
OFJM01000246
[OFJM] marine metagenome; sea ice
901
825
-
Ile
GAT
[ENA]
¢þ
>WENV181315064
OFJM01000286
[OFJM] marine metagenome; sea ice
1069
984
-
Ser
GGA
[ENA]
¢þ
>WENV181315061
OFJM01000165
[OFJM] marine metagenome; sea ice
1427
1502
+
Phe
GAA
[ENA]
¢þ
>WENV181315059
OFJM01000135
[OFJM] marine metagenome; sea ice
1608
1683
+
Ala
TGC
[ENA]
¢þ
>WENV181315060
OFJM01000135
[OFJM] marine metagenome; sea ice
1707
1783
+
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK