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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFJS] marine metagenome; sea ice
HIT:
73 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181316110
OFJS01013518
[OFJS] marine metagenome; sea ice
16
90
+
Phe
GAA
[ENA]
¢þ
>WENV181316114
OFJS01014048
[OFJS] marine metagenome; sea ice
21
97
+
Asn
GTT
[ENA]
¢þ
>WENV181316098
OFJS01009857
[OFJS] marine metagenome; sea ice
41
124
+
Tyr
GTA
[ENA]
¢þ
>WENV181316072
OFJS01003963
[OFJS] marine metagenome; sea ice
70
144
+
Gln
TTG
[ENA]
¢þ
>WENV181316069
OFJS01003782
[OFJS] marine metagenome; sea ice
83
156
+
Val
CAC
[ENA]
¢þ
>WENV181316089
OFJS01007762
[OFJS] marine metagenome; sea ice
87
11
-
Arg
TCT
[ENA]
¢þ
>WENV181316109
OFJS01013356
[OFJS] marine metagenome; sea ice
93
166
+
Pro
TGG
[ENA]
¢þ
>WENV181316097
OFJS01009524
[OFJS] marine metagenome; sea ice
95
167
+
Met
CAT
[ENA]
¢þ
>WENV181316087
OFJS01007702
[OFJS] marine metagenome; sea ice
104
180
+
His
GTG
[ENA]
¢þ
>WENV181316080
OFJS01006048
[OFJS] marine metagenome; sea ice
108
35
-
Arg
TCT
[ENA]
¢þ
>WENV181316067
OFJS01003685
[OFJS] marine metagenome; sea ice
123
198
+
Lys
CTT
[ENA]
¢þ
>WENV181316084
OFJS01007053
[OFJS] marine metagenome; sea ice
138
224
+
Leu
CAG
[ENA]
¢þ
>WENV181316053
OFJS01000380
[OFJS] marine metagenome; sea ice
157
83
-
Trp
CCA
[ENA]
¢þ
>WENV181316105
OFJS01011828
[OFJS] marine metagenome; sea ice
157
85
-
Arg
TCT
[ENA]
¢þ
>WENV181316100
OFJS01009927
[OFJS] marine metagenome; sea ice
161
84
-
Asp
GTC
[ENA]
¢þ
>WENV181316066
OFJS01003677
[OFJS] marine metagenome; sea ice
166
91
-
Phe
GAA
[ENA]
¢þ
>WENV181316115
OFJS01015005
[OFJS] marine metagenome; sea ice
200
124
-
Arg
CCG
[ENA]
¢þ
>WENV181316083
OFJS01006862
[OFJS] marine metagenome; sea ice
229
302
+
Lys
CTT
[ENA]
¢þ
>WENV181316117
OFJS01015785
[OFJS] marine metagenome; sea ice
230
154
-
Arg
ACG
[ENA]
¢þ
>WENV181316108
OFJS01013180
[OFJS] marine metagenome; sea ice
239
315
+
fMet
CAT
[ENA]
¢þ
>WENV181316106
OFJS01012754
[OFJS] marine metagenome; sea ice
254
179
-
Arg
TCT
[ENA]
¢þ
>WENV181316085
OFJS01007227
[OFJS] marine metagenome; sea ice
266
352
+
Leu
TAA
[ENA]
¢þ
>WENV181316056
OFJS01001151
[OFJS] marine metagenome; sea ice
268
341
+
Gly
GCC
[ENA]
¢þ
>WENV181316059
OFJS01002300
[OFJS] marine metagenome; sea ice
275
350
+
Thr
TGT
[ENA]
¢þ
>WENV181316094
OFJS01009034
[OFJS] marine metagenome; sea ice
277
204
-
Gly
TCC
[ENA]
¢þ
>WENV181316099
OFJS01009927
[OFJS] marine metagenome; sea ice
279
205
-
Val
TAC
[ENA]
¢þ
>WENV181316076
OFJS01004823
[OFJS] marine metagenome; sea ice
289
214
-
Phe
GAA
[ENA]
¢þ
>WENV181316088
OFJS01007745
[OFJS] marine metagenome; sea ice
294
369
+
Thr
CGT
[ENA]
¢þ
>WENV181316107
OFJS01013067
[OFJS] marine metagenome; sea ice
295
210
-
Ser
CGA
[ENA]
¢þ
>WENV181316092
OFJS01008853
[OFJS] marine metagenome; sea ice
295
371
+
Asp
GTC
[ENA]
¢þ
>WENV181316116
OFJS01015491
[OFJS] marine metagenome; sea ice
308
222
-
Leu
GAG
[ENA]
¢þ
>WENV181316112
OFJS01013916
[OFJS] marine metagenome; sea ice
309
238
-
Asp
GTC
[ENA]
¢þ
>WENV181316095
OFJS01009120
[OFJS] marine metagenome; sea ice
313
388
+
Asn
GTT
[ENA]
¢þ
>WENV181316078
OFJS01005119
[OFJS] marine metagenome; sea ice
320
245
-
Thr
CGT
[ENA]
¢þ
>WENV181316061
OFJS01002451
[OFJS] marine metagenome; sea ice
333
260
-
Pro
CGG
[ENA]
¢þ
>WENV181316070
OFJS01003782
[OFJS] marine metagenome; sea ice
338
262
-
Val
AAC
[ENA]
¢þ
>WENV181316079
OFJS01005395
[OFJS] marine metagenome; sea ice
370
457
+
Ser
GGA
[ENA]
¢þ
>WENV181316104
OFJS01011828
[OFJS] marine metagenome; sea ice
375
301
-
Val
TAC
[ENA]
¢þ
>WENV181316068
OFJS01003705
[OFJS] marine metagenome; sea ice
375
448
+
His
GTG
[ENA]
¢þ
>WENV181316064
OFJS01002986
[OFJS] marine metagenome; sea ice
382
301
-
Ser
AGA
[ENA]
¢þ
>WENV181316102
OFJS01011247
[OFJS] marine metagenome; sea ice
388
303
-
Ser
TGA
[ENA]
¢þ
>WENV181316101
OFJS01010521
[OFJS] marine metagenome; sea ice
388
471
+
Leu
CAA
[ENA]
¢þ
>WENV181316062
OFJS01002538
[OFJS] marine metagenome; sea ice
398
468
+
Gly
TCC
[ENA]
¢þ
>WENV181316093
OFJS01009034
[OFJS] marine metagenome; sea ice
410
326
-
Tyr
GTA
[ENA]
¢þ
>WENV181316081
OFJS01006801
[OFJS] marine metagenome; sea ice
427
351
-
Thr
TGT
[ENA]
¢þ
>WENV181316111
OFJS01013676
[OFJS] marine metagenome; sea ice
429
504
+
Arg
CCT
[ENA]
¢þ
>WENV181316082
OFJS01006851
[OFJS] marine metagenome; sea ice
454
538
+
Leu
CAA
[ENA]
¢þ
>WENV181316103
OFJS01011828
[OFJS] marine metagenome; sea ice
457
386
-
Pro
TGG
[ENA]
¢þ
>WENV181316096
OFJS01009269
[OFJS] marine metagenome; sea ice
467
391
-
Pro
GGG
[ENA]
¢þ
>WENV181316075
OFJS01004719
[OFJS] marine metagenome; sea ice
483
408
-
Ala
CGC
[ENA]
¢þ
>WENV181316091
OFJS01008304
[OFJS] marine metagenome; sea ice
485
561
+
Arg
TCT
[ENA]
¢þ
>WENV181316086
OFJS01007502
[OFJS] marine metagenome; sea ice
489
414
-
Trp
CCA
[ENA]
¢þ
>WENV181316113
OFJS01013922
[OFJS] marine metagenome; sea ice
496
422
-
Trp
CCA
[ENA]
¢þ
>WENV181316090
OFJS01007876
[OFJS] marine metagenome; sea ice
504
418
-
Ile2
CAT
[ENA]
¢þ
>WENV181316071
OFJS01003921
[OFJS] marine metagenome; sea ice
530
456
-
Thr
GGT
[ENA]
¢þ
>WENV181316065
OFJS01003460
[OFJS] marine metagenome; sea ice
559
648
+
Ser
GGA
[ENA]
¢þ
>WENV181316058
OFJS01001893
[OFJS] marine metagenome; sea ice
563
638
+
Ala
CGC
[ENA]
¢þ
>WENV181316073
OFJS01004089
[OFJS] marine metagenome; sea ice
567
494
-
Gln
CTG
[ENA]
¢þ
>WENV181316074
OFJS01004209
[OFJS] marine metagenome; sea ice
576
661
+
Ser
GCT
[ENA]
¢þ
>WENV181316063
OFJS01002986
[OFJS] marine metagenome; sea ice
585
512
-
Glu
CTC
[ENA]
¢þ
>WENV181316060
OFJS01002450
[OFJS] marine metagenome; sea ice
610
684
+
Arg
TCT
[ENA]
¢þ
>WENV181316077
OFJS01004886
[OFJS] marine metagenome; sea ice
661
586
-
Ile2
CAT
[ENA]
¢þ
>WENV181316054
OFJS01000584
[OFJS] marine metagenome; sea ice
669
593
-
Met
CAT
[ENA]
¢þ
>WENV181316057
OFJS01001751
[OFJS] marine metagenome; sea ice
897
822
-
Ala
CGC
[ENA]
¢þ
>WENV181316055
OFJS01000613
[OFJS] marine metagenome; sea ice
1143
1231
+
Phe
GAA
[ENA]
¢þ
>WENV181316052
OFJS01000304
[OFJS] marine metagenome; sea ice
1203
1128
-
Pro
TGG
[ENA]
¢þ
>WENV181316051
OFJS01000227
[OFJS] marine metagenome; sea ice
1305
1389
+
Leu
GAG
[ENA]
¢þ
>WENV181316050
OFJS01000176
[OFJS] marine metagenome; sea ice
1336
1249
-
Ser
TGA
[ENA]
¢þ
>WENV181316045
OFJS01000030
[OFJS] marine metagenome; sea ice
1771
1844
+
Ile
GAT
[ENA]
¢þ
>WENV181316046
OFJS01000030
[OFJS] marine metagenome; sea ice
1847
1920
+
Ala
TGC
[ENA]
¢þ
>WENV181316048
OFJS01000064
[OFJS] marine metagenome; sea ice
1948
1872
-
Ile
GAT
[ENA]
¢þ
>WENV181316049
OFJS01000176
[OFJS] marine metagenome; sea ice
1955
1880
-
fMet
CAT
[ENA]
¢þ
>WENV181316047
OFJS01000064
[OFJS] marine metagenome; sea ice
2047
1972
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK