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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFKJ] marine metagenome; sea ice
HIT:
135 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181321054
OFKJ01023705
[OFKJ] marine metagenome; sea ice
1
77
+
Leu
CAG
[ENA]
¢þ
>WENV181321034
OFKJ01017157
[OFKJ] marine metagenome; sea ice
9
84
+
His
GTG
[ENA]
¢þ
>WENV181321032
OFKJ01016212
[OFKJ] marine metagenome; sea ice
12
87
+
Ala
TGC
[ENA]
¢þ
>WENV181321060
OFKJ01027462
[OFKJ] marine metagenome; sea ice
43
124
+
Leu
TAG
[ENA]
¢þ
>WENV181321056
OFKJ01024688
[OFKJ] marine metagenome; sea ice
44
117
+
Asn
GTT
[ENA]
¢þ
>WENV181320953
OFKJ01001712
[OFKJ] marine metagenome; sea ice
59
144
+
Ser
TGA
[ENA]
¢þ
>WENV181321023
OFKJ01012697
[OFKJ] marine metagenome; sea ice
65
144
+
Leu
AAG
[ENA]
¢þ
>WENV181321006
OFKJ01009465
[OFKJ] marine metagenome; sea ice
71
155
+
Leu
GAG
[ENA]
¢þ
>WENV181321051
OFKJ01023021
[OFKJ] marine metagenome; sea ice
75
3
-
Val
TAC
[ENA]
¢þ
>WENV181321049
OFKJ01021337
[OFKJ] marine metagenome; sea ice
86
162
+
Met
CAT
[ENA]
¢þ
>WENV181321018
OFKJ01011372
[OFKJ] marine metagenome; sea ice
88
161
+
Ala
CGC
[ENA]
¢þ
>WENV181321047
OFKJ01019959
[OFKJ] marine metagenome; sea ice
89
13
-
Pro
GGG
[ENA]
¢þ
>WENV181321045
OFKJ01019716
[OFKJ] marine metagenome; sea ice
89
18
-
Phe
GAA
[ENA]
¢þ
>WENV181321040
OFKJ01018567
[OFKJ] marine metagenome; sea ice
96
181
+
Ser
GGA
[ENA]
¢þ
>WENV181320938
OFKJ01000857
[OFKJ] marine metagenome; sea ice
103
186
+
Tyr
GTA
[ENA]
¢þ
>WENV181321010
OFKJ01010456
[OFKJ] marine metagenome; sea ice
110
184
+
Ala
TGC
[ENA]
¢þ
>WENV181320980
OFKJ01005577
[OFKJ] marine metagenome; sea ice
115
40
-
Ala
TGC
[ENA]
¢þ
>WENV181320977
OFKJ01005080
[OFKJ] marine metagenome; sea ice
115
191
+
Arg
TCT
[ENA]
¢þ
>WENV181321035
OFKJ01017165
[OFKJ] marine metagenome; sea ice
120
209
+
Ser
GGA
[ENA]
¢þ
>WENV181321044
OFKJ01018938
[OFKJ] marine metagenome; sea ice
122
43
-
Leu
TAG
[ENA]
¢þ
>WENV181321013
OFKJ01011171
[OFKJ] marine metagenome; sea ice
122
198
+
Ile
GAT
[ENA]
¢þ
>WENV181320984
OFKJ01005746
[OFKJ] marine metagenome; sea ice
133
52
-
Tyr
GTA
[ENA]
¢þ
>WENV181321037
OFKJ01018242
[OFKJ] marine metagenome; sea ice
140
210
+
Asp
GTC
[ENA]
¢þ
>WENV181320950
OFKJ01001357
[OFKJ] marine metagenome; sea ice
147
220
+
Trp
CCA
[ENA]
¢þ
>WENV181321024
OFKJ01013169
[OFKJ] marine metagenome; sea ice
151
223
+
Arg
CCT
[ENA]
¢þ
>WENV181321011
OFKJ01010775
[OFKJ] marine metagenome; sea ice
158
86
-
Val
TAC
[ENA]
¢þ
>WENV181320989
OFKJ01006790
[OFKJ] marine metagenome; sea ice
176
249
+
His
GTG
[ENA]
¢þ
>WENV181320961
OFKJ01002631
[OFKJ] marine metagenome; sea ice
178
96
-
Leu
TAA
[ENA]
¢þ
>WENV181321031
OFKJ01016016
[OFKJ] marine metagenome; sea ice
188
112
-
Asp
GTC
[ENA]
¢þ
>WENV181320985
OFKJ01006270
[OFKJ] marine metagenome; sea ice
191
266
+
Lys
CTT
[ENA]
¢þ
>WENV181320990
OFKJ01007053
[OFKJ] marine metagenome; sea ice
192
273
+
Ser
CGA
[ENA]
¢þ
>WENV181321005
OFKJ01008993
[OFKJ] marine metagenome; sea ice
203
132
-
Pro
CGG
[ENA]
¢þ
>WENV181320999
OFKJ01008000
[OFKJ] marine metagenome; sea ice
208
135
-
Gly
TCC
[ENA]
¢þ
>WENV181321046
OFKJ01019959
[OFKJ] marine metagenome; sea ice
216
140
-
Val
GAC
[ENA]
¢þ
>WENV181320964
OFKJ01003547
[OFKJ] marine metagenome; sea ice
216
290
+
Phe
GAA
[ENA]
¢þ
>WENV181321014
OFKJ01011171
[OFKJ] marine metagenome; sea ice
216
291
+
Ala
TGC
[ENA]
¢þ
>WENV181320983
OFKJ01005746
[OFKJ] marine metagenome; sea ice
229
156
-
Thr
TGT
[ENA]
¢þ
>WENV181320992
OFKJ01007385
[OFKJ] marine metagenome; sea ice
232
308
+
Arg
CCG
[ENA]
¢þ
>WENV181321029
OFKJ01015634
[OFKJ] marine metagenome; sea ice
235
163
-
Met
CAT
[ENA]
¢þ
>WENV181321021
OFKJ01011660
[OFKJ] marine metagenome; sea ice
237
312
+
Ala
GGC
[ENA]
¢þ
>WENV181321000
OFKJ01008057
[OFKJ] marine metagenome; sea ice
240
316
+
Asp
GTC
[ENA]
¢þ
>WENV181321001
OFKJ01008152
[OFKJ] marine metagenome; sea ice
244
168
-
Arg
CCT
[ENA]
¢þ
>WENV181320995
OFKJ01007740
[OFKJ] marine metagenome; sea ice
250
326
+
Arg
CCT
[ENA]
¢þ
>WENV181321039
OFKJ01018421
[OFKJ] marine metagenome; sea ice
255
345
+
Ser
GGA
[ENA]
¢þ
>WENV181321012
OFKJ01011158
[OFKJ] marine metagenome; sea ice
264
336
+
Pro
CGG
[ENA]
¢þ
>WENV181320963
OFKJ01002962
[OFKJ] marine metagenome; sea ice
269
185
-
Leu
TAG
[ENA]
¢þ
>WENV181320939
OFKJ01000857
[OFKJ] marine metagenome; sea ice
276
349
+
Gly
TCC
[ENA]
¢þ
>WENV181321030
OFKJ01016016
[OFKJ] marine metagenome; sea ice
281
206
-
Val
TAC
[ENA]
¢þ
>WENV181320998
OFKJ01008000
[OFKJ] marine metagenome; sea ice
281
355
+
Pro
TGG
[ENA]
¢þ
>WENV181320972
OFKJ01004533
[OFKJ] marine metagenome; sea ice
292
207
-
Leu
TAA
[ENA]
¢þ
>WENV181321009
OFKJ01010435
[OFKJ] marine metagenome; sea ice
302
378
+
Arg
ACG
[ENA]
¢þ
>WENV181320988
OFKJ01006708
[OFKJ] marine metagenome; sea ice
304
231
-
fMet
CAT
[ENA]
¢þ
>WENV181320975
OFKJ01004760
[OFKJ] marine metagenome; sea ice
304
381
+
Arg
TCT
[ENA]
¢þ
>WENV181321028
OFKJ01015550
[OFKJ] marine metagenome; sea ice
305
390
+
Ser
GGA
[ENA]
¢þ
>WENV181320957
OFKJ01001913
[OFKJ] marine metagenome; sea ice
306
382
+
Asp
GTC
[ENA]
¢þ
>WENV181320962
OFKJ01002833
[OFKJ] marine metagenome; sea ice
310
237
-
Gly
CCC
[ENA]
¢þ
>WENV181321027
OFKJ01014778
[OFKJ] marine metagenome; sea ice
312
395
+
Ser
AGA
[ENA]
¢þ
>WENV181320994
OFKJ01007623
[OFKJ] marine metagenome; sea ice
314
386
+
Met
CAT
[ENA]
¢þ
>WENV181321022
OFKJ01011660
[OFKJ] marine metagenome; sea ice
317
392
+
Glu
TTC
[ENA]
¢þ
>WENV181320936
OFKJ01000759
[OFKJ] marine metagenome; sea ice
319
390
+
Gly
TCC
[ENA]
¢þ
>WENV181321048
OFKJ01020382
[OFKJ] marine metagenome; sea ice
324
254
-
Gly
GCC
[ENA]
¢þ
>WENV181321036
OFKJ01017636
[OFKJ] marine metagenome; sea ice
325
410
+
Leu
GAG
[ENA]
¢þ
>WENV181320965
OFKJ01003547
[OFKJ] marine metagenome; sea ice
329
402
+
Gln
TTG
[ENA]
¢þ
>WENV181321050
OFKJ01022062
[OFKJ] marine metagenome; sea ice
334
410
+
Met
CAT
[ENA]
¢þ
>WENV181321043
OFKJ01018848
[OFKJ] marine metagenome; sea ice
345
419
+
Thr
TGT
[ENA]
¢þ
>WENV181321058
OFKJ01026593
[OFKJ] marine metagenome; sea ice
345
421
+
Pro
TGG
[ENA]
¢þ
>WENV181321026
OFKJ01014721
[OFKJ] marine metagenome; sea ice
352
276
-
Arg
ACG
[ENA]
¢þ
>WENV181321038
OFKJ01018242
[OFKJ] marine metagenome; sea ice
354
284
-
Gly
CCC
[ENA]
¢þ
>WENV181321053
OFKJ01023533
[OFKJ] marine metagenome; sea ice
354
426
+
Gly
CCC
[ENA]
¢þ
>WENV181320931
OFKJ01000272
[OFKJ] marine metagenome; sea ice
355
430
+
Glu
CTC
[ENA]
¢þ
>WENV181320940
OFKJ01000857
[OFKJ] marine metagenome; sea ice
358
433
+
Thr
GGT
[ENA]
¢þ
>WENV181320996
OFKJ01007929
[OFKJ] marine metagenome; sea ice
369
294
-
Lys
TTT
[ENA]
¢þ
>WENV181320934
OFKJ01000481
[OFKJ] marine metagenome; sea ice
371
298
-
Ala
TGC
[ENA]
¢þ
>WENV181320973
OFKJ01004610
[OFKJ] marine metagenome; sea ice
376
301
-
His
GTG
[ENA]
¢þ
>WENV181320978
OFKJ01005149
[OFKJ] marine metagenome; sea ice
384
468
+
Leu
TAA
[ENA]
¢þ
>WENV181320982
OFKJ01005655
[OFKJ] marine metagenome; sea ice
387
315
-
Cys
GCA
[ENA]
¢þ
>WENV181321008
OFKJ01009715
[OFKJ] marine metagenome; sea ice
391
466
+
Gly
GCC
[ENA]
¢þ
>WENV181321004
OFKJ01008993
[OFKJ] marine metagenome; sea ice
401
327
-
Lys
TTT
[ENA]
¢þ
>WENV181321016
OFKJ01011355
[OFKJ] marine metagenome; sea ice
407
482
+
Val
TAC
[ENA]
¢þ
>WENV181320941
OFKJ01000928
[OFKJ] marine metagenome; sea ice
407
495
+
Ser
GCT
[ENA]
¢þ
>WENV181320991
OFKJ01007277
[OFKJ] marine metagenome; sea ice
413
486
+
Cys
GCA
[ENA]
¢þ
>WENV181321042
OFKJ01018610
[OFKJ] marine metagenome; sea ice
416
341
-
Ala
TGC
[ENA]
¢þ
>WENV181321020
OFKJ01011639
[OFKJ] marine metagenome; sea ice
419
492
+
Gln
TTG
[ENA]
¢þ
>WENV181320958
OFKJ01002099
[OFKJ] marine metagenome; sea ice
428
342
-
Leu
CAG
[ENA]
¢þ
>WENV181321025
OFKJ01014342
[OFKJ] marine metagenome; sea ice
431
356
-
Phe
GAA
[ENA]
¢þ
>WENV181321007
OFKJ01009465
[OFKJ] marine metagenome; sea ice
438
514
+
fMet
CAT
[ENA]
¢þ
>WENV181320987
OFKJ01006436
[OFKJ] marine metagenome; sea ice
442
369
-
Gly
TCC
[ENA]
¢þ
>WENV181321055
OFKJ01024590
[OFKJ] marine metagenome; sea ice
449
375
-
Ala
TGC
[ENA]
¢þ
>WENV181321057
OFKJ01024856
[OFKJ] marine metagenome; sea ice
457
383
-
Glu
CTC
[ENA]
¢þ
>WENV181321059
OFKJ01027167
[OFKJ] marine metagenome; sea ice
461
377
-
Leu
TAG
[ENA]
¢þ
>WENV181320949
OFKJ01001355
[OFKJ] marine metagenome; sea ice
468
393
-
Ala
TGC
[ENA]
¢þ
>WENV181321033
OFKJ01016562
[OFKJ] marine metagenome; sea ice
469
543
+
Trp
CCA
[ENA]
¢þ
>WENV181320969
OFKJ01003785
[OFKJ] marine metagenome; sea ice
474
550
+
Val
GAC
[ENA]
¢þ
>WENV181320993
OFKJ01007492
[OFKJ] marine metagenome; sea ice
474
550
+
Arg
CCG
[ENA]
¢þ
>WENV181320933
OFKJ01000481
[OFKJ] marine metagenome; sea ice
479
405
-
Ile
GAT
[ENA]
¢þ
>WENV181320946
OFKJ01001177
[OFKJ] marine metagenome; sea ice
484
559
+
Glu
TTC
[ENA]
¢þ
>WENV181321052
OFKJ01023087
[OFKJ] marine metagenome; sea ice
485
409
-
Lys
TTT
[ENA]
¢þ
>WENV181320951
OFKJ01001478
[OFKJ] marine metagenome; sea ice
494
575
+
Leu
CAA
[ENA]
¢þ
>WENV181320937
OFKJ01000759
[OFKJ] marine metagenome; sea ice
502
573
+
Thr
TGT
[ENA]
¢þ
>WENV181320956
OFKJ01001823
[OFKJ] marine metagenome; sea ice
505
429
-
Trp
CCA
[ENA]
¢þ
>WENV181320979
OFKJ01005189
[OFKJ] marine metagenome; sea ice
508
583
+
Arg
CCG
[ENA]
¢þ
>WENV181321041
OFKJ01018610
[OFKJ] marine metagenome; sea ice
511
435
-
Ile
GAT
[ENA]
¢þ
>WENV181321017
OFKJ01011355
[OFKJ] marine metagenome; sea ice
521
596
+
Val
GAC
[ENA]
¢þ
>WENV181320986
OFKJ01006421
[OFKJ] marine metagenome; sea ice
525
450
-
Asn
GTT
[ENA]
¢þ
>WENV181320970
OFKJ01004399
[OFKJ] marine metagenome; sea ice
530
459
-
Ser
CGA
[ENA]
¢þ
>WENV181321015
OFKJ01011208
[OFKJ] marine metagenome; sea ice
534
459
-
Ala
TGC
[ENA]
¢þ
>WENV181320967
OFKJ01003547
[OFKJ] marine metagenome; sea ice
536
462
-
Asp
GTC
[ENA]
¢þ
>WENV181320959
OFKJ01002381
[OFKJ] marine metagenome; sea ice
546
470
-
fMet
CAT
[ENA]
¢þ
>WENV181320971
OFKJ01004533
[OFKJ] marine metagenome; sea ice
548
478
-
Cys
GCA
[ENA]
¢þ
>WENV181321019
OFKJ01011500
[OFKJ] marine metagenome; sea ice
550
474
-
Met
CAT
[ENA]
¢þ
>WENV181321003
OFKJ01008956
[OFKJ] marine metagenome; sea ice
550
635
+
Leu
TAA
[ENA]
¢þ
>WENV181320942
OFKJ01000928
[OFKJ] marine metagenome; sea ice
562
637
+
Asp
GTC
[ENA]
¢þ
>WENV181321002
OFKJ01008716
[OFKJ] marine metagenome; sea ice
563
639
+
Ile2
CAT
[ENA]
¢þ
>WENV181320948
OFKJ01001355
[OFKJ] marine metagenome; sea ice
570
494
-
Ile
GAT
[ENA]
¢þ
>WENV181320954
OFKJ01001741
[OFKJ] marine metagenome; sea ice
575
651
+
Ile2
CAT
[ENA]
¢þ
>WENV181320997
OFKJ01007953
[OFKJ] marine metagenome; sea ice
580
652
+
Gln
TTG
[ENA]
¢þ
>WENV181320960
OFKJ01002631
[OFKJ] marine metagenome; sea ice
587
659
+
Ile
TAT
[ENA]
¢þ
>WENV181320976
OFKJ01004809
[OFKJ] marine metagenome; sea ice
611
525
-
Leu
CAG
[ENA]
¢þ
>WENV181320930
OFKJ01000033
[OFKJ] marine metagenome; sea ice
616
691
+
Ala
TGC
[ENA]
¢þ
>WENV181320947
OFKJ01001177
[OFKJ] marine metagenome; sea ice
616
692
+
Asp
GTC
[ENA]
¢þ
>WENV181320981
OFKJ01005655
[OFKJ] marine metagenome; sea ice
631
560
-
His
GTG
[ENA]
¢þ
>WENV181320968
OFKJ01003698
[OFKJ] marine metagenome; sea ice
642
725
+
Tyr
GTA
[ENA]
¢þ
>WENV181320952
OFKJ01001511
[OFKJ] marine metagenome; sea ice
681
757
+
Arg
CCG
[ENA]
¢þ
>WENV181320966
OFKJ01003547
[OFKJ] marine metagenome; sea ice
683
608
-
Glu
CTC
[ENA]
¢þ
>WENV181320974
OFKJ01004739
[OFKJ] marine metagenome; sea ice
684
608
-
Pro
CGG
[ENA]
¢þ
>WENV181320935
OFKJ01000707
[OFKJ] marine metagenome; sea ice
741
814
+
Ile
TAT
[ENA]
¢þ
>WENV181320945
OFKJ01001098
[OFKJ] marine metagenome; sea ice
830
754
-
Met
CAT
[ENA]
¢þ
>WENV181320955
OFKJ01001764
[OFKJ] marine metagenome; sea ice
910
836
-
Ile2
CAT
[ENA]
¢þ
>WENV181320943
OFKJ01001049
[OFKJ] marine metagenome; sea ice
939
1023
+
Leu
CAA
[ENA]
¢þ
>WENV181320944
OFKJ01001051
[OFKJ] marine metagenome; sea ice
970
896
-
Lys
TTT
[ENA]
¢þ
>WENV181320932
OFKJ01000472
[OFKJ] marine metagenome; sea ice
1098
1025
-
Arg
ACG
[ENA]
¢þ
>WENV181320928
OFKJ01000009
[OFKJ] marine metagenome; sea ice
1715
1788
+
Ile
GAT
[ENA]
¢þ
>WENV181320929
OFKJ01000009
[OFKJ] marine metagenome; sea ice
1791
1864
+
Ala
TGC
[ENA]
¢þ
>WENV181320927
OFKJ01000003
[OFKJ] marine metagenome; sea ice
4636
4560
-
Ile
GAT
[ENA]
¢þ
>WENV181320926
OFKJ01000003
[OFKJ] marine metagenome; sea ice
4735
4660
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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