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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OFKL] marine metagenome; seawater
HIT:
153 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181321345
OFKL01012531
[OFKL] marine metagenome; seawater
9
93
+
Leu
TAG
[ENA]
¢þ
>WENV181321284
OFKL01002800
[OFKL] marine metagenome; seawater
43
119
+
fMet
CAT
[ENA]
¢þ
>WENV181321272
OFKL01001887
[OFKL] marine metagenome; seawater
43
126
+
Leu
TAA
[ENA]
¢þ
>WENV181321327
OFKL01008005
[OFKL] marine metagenome; seawater
48
123
+
Ala
GGC
[ENA]
¢þ
>WENV181321299
OFKL01004597
[OFKL] marine metagenome; seawater
58
132
+
Thr
GGT
[ENA]
¢þ
>WENV181321338
OFKL01010605
[OFKL] marine metagenome; seawater
67
139
+
His
GTG
[ENA]
¢þ
>WENV181321240
OFKL01000447
[OFKL] marine metagenome; seawater
76
1
-
Val
TAC
[ENA]
¢þ
>WENV181321263
OFKL01000831
[OFKL] marine metagenome; seawater
79
6
-
Thr
CGT
[ENA]
¢þ
>WENV181321343
OFKL01011346
[OFKL] marine metagenome; seawater
82
8
-
Arg
TCT
[ENA]
¢þ
>WENV181321364
OFKL01019141
[OFKL] marine metagenome; seawater
95
167
+
Val
CAC
[ENA]
¢þ
>WENV181321298
OFKL01004583
[OFKL] marine metagenome; seawater
104
32
-
Phe
GAA
[ENA]
¢þ
>WENV181321286
OFKL01003161
[OFKL] marine metagenome; seawater
107
180
+
Cys
GCA
[ENA]
¢þ
>WENV181321335
OFKL01010137
[OFKL] marine metagenome; seawater
113
41
-
Asn
GTT
[ENA]
¢þ
>WENV181321234
OFKL01000264
[OFKL] marine metagenome; seawater
118
34
-
Leu
TAG
[ENA]
¢þ
>WENV181321300
OFKL01004728
[OFKL] marine metagenome; seawater
119
193
+
Gln
TTG
[ENA]
¢þ
>WENV181321351
OFKL01014564
[OFKL] marine metagenome; seawater
123
196
+
Cys
GCA
[ENA]
¢þ
>WENV181321328
OFKL01008546
[OFKL] marine metagenome; seawater
125
199
+
His
GTG
[ENA]
¢þ
>WENV181321273
OFKL01001887
[OFKL] marine metagenome; seawater
130
202
+
Gln
TTG
[ENA]
¢þ
>WENV181321353
OFKL01015843
[OFKL] marine metagenome; seawater
149
220
+
Thr
TGT
[ENA]
¢þ
>WENV181321324
OFKL01007743
[OFKL] marine metagenome; seawater
151
224
+
Glu
TTC
[ENA]
¢þ
>WENV181321360
OFKL01017278
[OFKL] marine metagenome; seawater
154
79
-
Asn
GTT
[ENA]
¢þ
>WENV181321262
OFKL01000831
[OFKL] marine metagenome; seawater
155
83
-
Asn
GTT
[ENA]
¢þ
>WENV181321371
OFKL01023710
[OFKL] marine metagenome; seawater
168
244
+
Arg
TCT
[ENA]
¢þ
>WENV181321349
OFKL01013701
[OFKL] marine metagenome; seawater
170
244
+
Val
CAC
[ENA]
¢þ
>WENV181321305
OFKL01005479
[OFKL] marine metagenome; seawater
172
101
-
Met
CAT
[ENA]
¢þ
>WENV181321342
OFKL01011346
[OFKL] marine metagenome; seawater
187
112
-
Pro
TGG
[ENA]
¢þ
>WENV181321369
OFKL01023148
[OFKL] marine metagenome; seawater
188
262
+
Glu
TTC
[ENA]
¢þ
>WENV181321361
OFKL01017470
[OFKL] marine metagenome; seawater
200
114
-
Leu
GAG
[ENA]
¢þ
>WENV181321274
OFKL01001887
[OFKL] marine metagenome; seawater
206
279
+
Tyr
GTA
[ENA]
¢þ
>WENV181321250
OFKL01000629
[OFKL] marine metagenome; seawater
210
134
-
Asp
GTC
[ENA]
¢þ
>WENV181321310
OFKL01005863
[OFKL] marine metagenome; seawater
217
292
+
Trp
CCA
[ENA]
¢þ
>WENV181321334
OFKL01009942
[OFKL] marine metagenome; seawater
225
301
+
Pro
GGG
[ENA]
¢þ
>WENV181321344
OFKL01012181
[OFKL] marine metagenome; seawater
226
151
-
Ala
TGC
[ENA]
¢þ
>WENV181321347
OFKL01012794
[OFKL] marine metagenome; seawater
233
159
-
Thr
TGT
[ENA]
¢þ
>WENV181321368
OFKL01022862
[OFKL] marine metagenome; seawater
236
160
-
Arg
TCT
[ENA]
¢þ
>WENV181321350
OFKL01014090
[OFKL] marine metagenome; seawater
236
164
-
Asn
GTT
[ENA]
¢þ
>WENV181321321
OFKL01007601
[OFKL] marine metagenome; seawater
238
313
+
Met
CAT
[ENA]
¢þ
>WENV181321348
OFKL01013363
[OFKL] marine metagenome; seawater
239
329
+
Ser
GCT
[ENA]
¢þ
>WENV181321355
OFKL01016049
[OFKL] marine metagenome; seawater
243
169
-
Ala
GGC
[ENA]
¢þ
>WENV181321331
OFKL01009006
[OFKL] marine metagenome; seawater
245
316
+
Ala
CGC
[ENA]
¢þ
>WENV181321233
OFKL01000264
[OFKL] marine metagenome; seawater
250
175
-
Phe
GAA
[ENA]
¢þ
>WENV181321237
OFKL01000352
[OFKL] marine metagenome; seawater
260
349
+
Ser
CGA
[ENA]
¢þ
>WENV181321297
OFKL01004416
[OFKL] marine metagenome; seawater
265
341
+
Pro
TGG
[ENA]
¢þ
>WENV181321370
OFKL01023231
[OFKL] marine metagenome; seawater
268
194
-
Thr
TGT
[ENA]
¢þ
>WENV181321325
OFKL01007760
[OFKL] marine metagenome; seawater
268
342
+
Phe
GAA
[ENA]
¢þ
>WENV181321275
OFKL01001887
[OFKL] marine metagenome; seawater
283
355
+
Thr
TGT
[ENA]
¢þ
>WENV181321315
OFKL01006164
[OFKL] marine metagenome; seawater
284
356
+
Arg
TCT
[ENA]
¢þ
>WENV181321346
OFKL01012620
[OFKL] marine metagenome; seawater
289
215
-
Glu
TTC
[ENA]
¢þ
>WENV181321307
OFKL01005581
[OFKL] marine metagenome; seawater
291
364
+
Thr
GGT
[ENA]
¢þ
>WENV181321359
OFKL01017258
[OFKL] marine metagenome; seawater
291
366
+
Arg
TCT
[ENA]
¢þ
>WENV181321314
OFKL01006008
[OFKL] marine metagenome; seawater
301
229
-
Thr
GGT
[ENA]
¢þ
>WENV181321294
OFKL01004297
[OFKL] marine metagenome; seawater
305
381
+
fMet
CAT
[ENA]
¢þ
>WENV181321319
OFKL01007223
[OFKL] marine metagenome; seawater
307
382
+
Glu
TTC
[ENA]
¢þ
>WENV181321341
OFKL01011346
[OFKL] marine metagenome; seawater
310
226
-
Ser
GCT
[ENA]
¢þ
>WENV181321293
OFKL01004142
[OFKL] marine metagenome; seawater
312
236
-
Asp
GTC
[ENA]
¢þ
>WENV181321352
OFKL01015402
[OFKL] marine metagenome; seawater
313
384
+
Cys
GCA
[ENA]
¢þ
>WENV181321266
OFKL01001381
[OFKL] marine metagenome; seawater
317
392
+
Ala
TGC
[ENA]
¢þ
>WENV181321362
OFKL01018346
[OFKL] marine metagenome; seawater
318
244
-
Met
CAT
[ENA]
¢þ
>WENV181321367
OFKL01021612
[OFKL] marine metagenome; seawater
319
390
+
His
GTG
[ENA]
¢þ
>WENV181321357
OFKL01017108
[OFKL] marine metagenome; seawater
325
400
+
Thr
TGT
[ENA]
¢þ
>WENV181321316
OFKL01006436
[OFKL] marine metagenome; seawater
336
412
+
Arg
TCT
[ENA]
¢þ
>WENV181321354
OFKL01015996
[OFKL] marine metagenome; seawater
339
252
-
Ser
TGA
[ENA]
¢þ
>WENV181321261
OFKL01000831
[OFKL] marine metagenome; seawater
341
264
-
Leu
AAG
[ENA]
¢þ
>WENV181321363
OFKL01018839
[OFKL] marine metagenome; seawater
348
275
-
Thr
GGT
[ENA]
¢þ
>WENV181321246
OFKL01000559
[OFKL] marine metagenome; seawater
352
281
-
Thr
AGT
[ENA]
¢þ
>WENV181321326
OFKL01007878
[OFKL] marine metagenome; seawater
357
283
-
Arg
TCG
[ENA]
¢þ
>WENV181321358
OFKL01017151
[OFKL] marine metagenome; seawater
359
287
-
Arg
TCT
[ENA]
¢þ
>WENV181321232
OFKL01000259
[OFKL] marine metagenome; seawater
366
283
-
Ser
CGA
[ENA]
¢þ
>WENV181321323
OFKL01007727
[OFKL] marine metagenome; seawater
368
295
-
Gly
TCC
[ENA]
¢þ
>WENV181321329
OFKL01008688
[OFKL] marine metagenome; seawater
377
452
+
Thr
TGT
[ENA]
¢þ
>WENV181321313
OFKL01006008
[OFKL] marine metagenome; seawater
382
309
-
Gly
TCC
[ENA]
¢þ
>WENV181321332
OFKL01009006
[OFKL] marine metagenome; seawater
385
466
+
Leu
AAG
[ENA]
¢þ
>WENV181321330
OFKL01008757
[OFKL] marine metagenome; seawater
397
322
-
Lys
TTT
[ENA]
¢þ
>WENV181321308
OFKL01005581
[OFKL] marine metagenome; seawater
401
474
+
Met
CAT
[ENA]
¢þ
>WENV181321292
OFKL01004142
[OFKL] marine metagenome; seawater
402
327
-
Val
TAC
[ENA]
¢þ
>WENV181321337
OFKL01010365
[OFKL] marine metagenome; seawater
402
475
+
Gln
TTG
[ENA]
¢þ
>WENV181321302
OFKL01005072
[OFKL] marine metagenome; seawater
404
331
-
Arg
GCG
[ENA]
¢þ
>WENV181321238
OFKL01000368
[OFKL] marine metagenome; seawater
409
335
-
Ile
GAT
[ENA]
¢þ
>WENV181321339
OFKL01010605
[OFKL] marine metagenome; seawater
411
483
+
Val
TAC
[ENA]
¢þ
>WENV181321365
OFKL01020195
[OFKL] marine metagenome; seawater
425
350
-
Lys
TTT
[ENA]
¢þ
>WENV181321245
OFKL01000559
[OFKL] marine metagenome; seawater
427
353
-
Met
CAT
[ENA]
¢þ
>WENV181321336
OFKL01010166
[OFKL] marine metagenome; seawater
429
354
-
Gly
GCC
[ENA]
¢þ
>WENV181321219
OFKL01000005
[OFKL] marine metagenome; seawater
430
359
-
Thr
AGT
[ENA]
¢þ
>WENV181321311
OFKL01005959
[OFKL] marine metagenome; seawater
435
510
+
Glu
TTC
[ENA]
¢þ
>WENV181321285
OFKL01002826
[OFKL] marine metagenome; seawater
446
370
-
Met
CAT
[ENA]
¢þ
>WENV181321366
OFKL01021589
[OFKL] marine metagenome; seawater
466
393
-
Gln
TTG
[ENA]
¢þ
>WENV181321356
OFKL01016230
[OFKL] marine metagenome; seawater
468
392
-
Ile2
CAT
[ENA]
¢þ
>WENV181321320
OFKL01007558
[OFKL] marine metagenome; seawater
477
564
+
Ser
GGA
[ENA]
¢þ
>WENV181321303
OFKL01005180
[OFKL] marine metagenome; seawater
480
406
-
Met
CAT
[ENA]
¢þ
>WENV181321301
OFKL01005072
[OFKL] marine metagenome; seawater
491
418
-
Arg
ACG
[ENA]
¢þ
>WENV181321322
OFKL01007727
[OFKL] marine metagenome; seawater
500
415
-
Tyr
GTA
[ENA]
¢þ
>WENV181321312
OFKL01006008
[OFKL] marine metagenome; seawater
504
421
-
Tyr
GTA
[ENA]
¢þ
>WENV181321287
OFKL01003709
[OFKL] marine metagenome; seawater
509
428
-
Leu
TAG
[ENA]
¢þ
>WENV181321306
OFKL01005519
[OFKL] marine metagenome; seawater
528
612
+
Leu
CAA
[ENA]
¢þ
>WENV181321333
OFKL01009043
[OFKL] marine metagenome; seawater
531
442
-
Ser
TGA
[ENA]
¢þ
>WENV181321254
OFKL01000720
[OFKL] marine metagenome; seawater
532
607
+
Gly
GCC
[ENA]
¢þ
>WENV181321251
OFKL01000651
[OFKL] marine metagenome; seawater
536
611
+
Phe
GAA
[ENA]
¢þ
>WENV181321265
OFKL01001041
[OFKL] marine metagenome; seawater
537
463
-
Asn
GTT
[ENA]
¢þ
>WENV181321239
OFKL01000435
[OFKL] marine metagenome; seawater
544
620
+
Ile
GAT
[ENA]
¢þ
>WENV181321260
OFKL01000831
[OFKL] marine metagenome; seawater
555
484
-
Gln
CTG
[ENA]
¢þ
>WENV181321291
OFKL01004110
[OFKL] marine metagenome; seawater
560
635
+
Ala
GGC
[ENA]
¢þ
>WENV181321318
OFKL01006612
[OFKL] marine metagenome; seawater
561
486
-
Ala
TGC
[ENA]
¢þ
>WENV181321276
OFKL01001951
[OFKL] marine metagenome; seawater
563
639
+
fMet
CAT
[ENA]
¢þ
>WENV181321295
OFKL01004351
[OFKL] marine metagenome; seawater
573
657
+
Ser
TGA
[ENA]
¢þ
>WENV181321340
OFKL01011319
[OFKL] marine metagenome; seawater
574
499
-
Val
GAC
[ENA]
¢þ
>WENV181321290
OFKL01003955
[OFKL] marine metagenome; seawater
580
655
+
Val
AAC
[ENA]
¢þ
>WENV181321288
OFKL01003840
[OFKL] marine metagenome; seawater
585
658
+
Cys
GCA
[ENA]
¢þ
>WENV181321282
OFKL01002776
[OFKL] marine metagenome; seawater
590
665
+
Thr
TGT
[ENA]
¢þ
>WENV181321278
OFKL01002163
[OFKL] marine metagenome; seawater
623
553
-
Gly
TCC
[ENA]
¢þ
>WENV181321270
OFKL01001774
[OFKL] marine metagenome; seawater
628
554
-
Gly
TCC
[ENA]
¢þ
>WENV181321222
OFKL01000107
[OFKL] marine metagenome; seawater
632
716
+
Leu
TAA
[ENA]
¢þ
>WENV181321296
OFKL01004407
[OFKL] marine metagenome; seawater
635
548
-
Ser
GGA
[ENA]
¢þ
>WENV181321259
OFKL01000831
[OFKL] marine metagenome; seawater
639
567
-
Glu
CTC
[ENA]
¢þ
>WENV181321317
OFKL01006612
[OFKL] marine metagenome; seawater
648
571
-
Arg
TCT
[ENA]
¢þ
>WENV181321283
OFKL01002776
[OFKL] marine metagenome; seawater
671
747
+
Arg
ACG
[ENA]
¢þ
>WENV181321309
OFKL01005607
[OFKL] marine metagenome; seawater
676
604
-
Glu
CTC
[ENA]
¢þ
>WENV181321279
OFKL01002174
[OFKL] marine metagenome; seawater
689
764
+
Arg
CCT
[ENA]
¢þ
>WENV181321289
OFKL01003840
[OFKL] marine metagenome; seawater
709
784
+
Asn
GTT
[ENA]
¢þ
>WENV181321258
OFKL01000831
[OFKL] marine metagenome; seawater
727
655
-
Trp
CCA
[ENA]
¢þ
>WENV181321304
OFKL01005280
[OFKL] marine metagenome; seawater
732
656
-
Arg
TCG
[ENA]
¢þ
>WENV181321264
OFKL01001015
[OFKL] marine metagenome; seawater
849
922
+
Gly
TCC
[ENA]
¢þ
>WENV181321224
OFKL01000109
[OFKL] marine metagenome; seawater
850
775
-
Thr
TGT
[ENA]
¢þ
>WENV181321256
OFKL01000827
[OFKL] marine metagenome; seawater
880
805
-
Ile2
CAT
[ENA]
¢þ
>WENV181321249
OFKL01000612
[OFKL] marine metagenome; seawater
887
811
-
His
GTG
[ENA]
¢þ
>WENV181321225
OFKL01000112
[OFKL] marine metagenome; seawater
893
967
+
Gln
TTG
[ENA]
¢þ
>WENV181321281
OFKL01002624
[OFKL] marine metagenome; seawater
903
829
-
Arg
TCG
[ENA]
¢þ
>WENV181321247
OFKL01000589
[OFKL] marine metagenome; seawater
918
992
+
Asn
GTT
[ENA]
¢þ
>WENV181321280
OFKL01002616
[OFKL] marine metagenome; seawater
919
848
-
Cys
GCA
[ENA]
¢þ
>WENV181321223
OFKL01000109
[OFKL] marine metagenome; seawater
941
867
-
Lys
CTT
[ENA]
¢þ
>WENV181321269
OFKL01001668
[OFKL] marine metagenome; seawater
950
875
-
His
GTG
[ENA]
¢þ
>WENV181321226
OFKL01000112
[OFKL] marine metagenome; seawater
973
1047
+
Tyr
GTA
[ENA]
¢þ
>WENV181321242
OFKL01000459
[OFKL] marine metagenome; seawater
978
903
-
Lys
TTT
[ENA]
¢þ
>WENV181321255
OFKL01000827
[OFKL] marine metagenome; seawater
981
896
-
Leu
TAA
[ENA]
¢þ
>WENV181321235
OFKL01000332
[OFKL] marine metagenome; seawater
994
1069
+
Gln
CTG
[ENA]
¢þ
>WENV181321252
OFKL01000651
[OFKL] marine metagenome; seawater
996
1072
+
His
GTG
[ENA]
¢þ
>WENV181321268
OFKL01001666
[OFKL] marine metagenome; seawater
1000
1076
+
Ile
GAT
[ENA]
¢þ
>WENV181321277
OFKL01002032
[OFKL] marine metagenome; seawater
1032
958
-
Asn
GTT
[ENA]
¢þ
>WENV181321267
OFKL01001580
[OFKL] marine metagenome; seawater
1042
1129
+
Ser
TGA
[ENA]
¢þ
>WENV181321271
OFKL01001833
[OFKL] marine metagenome; seawater
1051
975
-
Pro
TGG
[ENA]
¢þ
>WENV181321257
OFKL01000831
[OFKL] marine metagenome; seawater
1055
1138
+
Ser
AGA
[ENA]
¢þ
>WENV181321236
OFKL01000332
[OFKL] marine metagenome; seawater
1075
1150
+
Lys
TTT
[ENA]
¢þ
>WENV181321227
OFKL01000112
[OFKL] marine metagenome; seawater
1083
1157
+
Asn
GTT
[ENA]
¢þ
>WENV181321253
OFKL01000703
[OFKL] marine metagenome; seawater
1110
1185
+
Glu
TTC
[ENA]
¢þ
>WENV181321231
OFKL01000256
[OFKL] marine metagenome; seawater
1247
1331
+
Leu
CAA
[ENA]
¢þ
>WENV181321229
OFKL01000190
[OFKL] marine metagenome; seawater
1356
1431
+
Thr
CGT
[ENA]
¢þ
>WENV181321241
OFKL01000449
[OFKL] marine metagenome; seawater
1405
1478
+
Ile
TAT
[ENA]
¢þ
>WENV181321244
OFKL01000525
[OFKL] marine metagenome; seawater
1510
1422
-
Ser
GCT
[ENA]
¢þ
>WENV181321248
OFKL01000602
[OFKL] marine metagenome; seawater
1555
1630
+
Trp
CCA
[ENA]
¢þ
>WENV181321243
OFKL01000525
[OFKL] marine metagenome; seawater
1642
1568
-
Trp
CCA
[ENA]
¢þ
>WENV181321228
OFKL01000182
[OFKL] marine metagenome; seawater
1749
1833
+
Tyr
GTA
[ENA]
¢þ
>WENV181321230
OFKL01000230
[OFKL] marine metagenome; seawater
2637
2564
-
Ile
TAT
[ENA]
¢þ
>WENV181321221
OFKL01000035
[OFKL] marine metagenome; seawater
3302
3376
+
Arg
CCT
[ENA]
¢þ
>WENV181321220
OFKL01000015
[OFKL] marine metagenome; seawater
5777
5704
-
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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