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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OFKS] marine metagenome; sea ice
HIT:
43 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181322508
OFKS01001596
[OFKS] marine metagenome; sea ice
38
123
+
Tyr
GTA
[ENA]
¢þ
>WENV181322500
OFKS01000160
[OFKS] marine metagenome; sea ice
76
1
-
Ala
TGC
[ENA]
¢þ
>WENV181322524
OFKS01004304
[OFKS] marine metagenome; sea ice
82
10
-
Gly
GCC
[ENA]
¢þ
>WENV181322521
OFKS01003972
[OFKS] marine metagenome; sea ice
158
83
-
Lys
CTT
[ENA]
¢þ
>WENV181322535
OFKS01007768
[OFKS] marine metagenome; sea ice
168
92
-
Gln
TTG
[ENA]
¢þ
>WENV181322499
OFKS01000160
[OFKS] marine metagenome; sea ice
171
95
-
Ile
GAT
[ENA]
¢þ
>WENV181322503
OFKS01000528
[OFKS] marine metagenome; sea ice
172
87
-
Leu
CAA
[ENA]
¢þ
>WENV181322511
OFKS01002312
[OFKS] marine metagenome; sea ice
178
264
+
Leu
TAA
[ENA]
¢þ
>WENV181322537
OFKS01008328
[OFKS] marine metagenome; sea ice
183
109
-
Pro
GGG
[ENA]
¢þ
>WENV181322536
OFKS01008049
[OFKS] marine metagenome; sea ice
191
102
-
Ser
GGA
[ENA]
¢þ
>WENV181322539
OFKS01008730
[OFKS] marine metagenome; sea ice
193
268
+
Ala
CGC
[ENA]
¢þ
>WENV181322513
OFKS01002665
[OFKS] marine metagenome; sea ice
239
314
+
Lys
TTT
[ENA]
¢þ
>WENV181322512
OFKS01002633
[OFKS] marine metagenome; sea ice
253
325
+
Glu
TTC
[ENA]
¢þ
>WENV181322498
OFKS01000160
[OFKS] marine metagenome; sea ice
270
195
-
Ala
TGC
[ENA]
¢þ
>WENV181322540
OFKS01009488
[OFKS] marine metagenome; sea ice
274
199
-
Glu
TTC
[ENA]
¢þ
>WENV181322522
OFKS01004059
[OFKS] marine metagenome; sea ice
278
354
+
Arg
ACG
[ENA]
¢þ
>WENV181322531
OFKS01006614
[OFKS] marine metagenome; sea ice
286
359
+
Arg
ACG
[ENA]
¢þ
>WENV181322514
OFKS01002998
[OFKS] marine metagenome; sea ice
286
361
+
Phe
GAA
[ENA]
¢þ
>WENV181322525
OFKS01004616
[OFKS] marine metagenome; sea ice
290
215
-
Ala
GGC
[ENA]
¢þ
>WENV181322534
OFKS01007080
[OFKS] marine metagenome; sea ice
291
375
+
Tyr
GTA
[ENA]
¢þ
>WENV181322509
OFKS01001716
[OFKS] marine metagenome; sea ice
294
374
+
Leu
AAG
[ENA]
¢þ
>WENV181322532
OFKS01006881
[OFKS] marine metagenome; sea ice
302
227
-
Thr
CGT
[ENA]
¢þ
>WENV181322526
OFKS01005157
[OFKS] marine metagenome; sea ice
308
234
-
Asn
GTT
[ENA]
¢þ
>WENV181322538
OFKS01008389
[OFKS] marine metagenome; sea ice
309
235
-
Gly
GCC
[ENA]
¢þ
>WENV181322515
OFKS01003100
[OFKS] marine metagenome; sea ice
318
397
+
Leu
AAG
[ENA]
¢þ
>WENV181322519
OFKS01003418
[OFKS] marine metagenome; sea ice
344
258
-
Leu
TAA
[ENA]
¢þ
>WENV181322530
OFKS01006528
[OFKS] marine metagenome; sea ice
353
270
-
Leu
CAA
[ENA]
¢þ
>WENV181322507
OFKS01001575
[OFKS] marine metagenome; sea ice
369
295
-
Gln
TTG
[ENA]
¢þ
>WENV181322520
OFKS01003658
[OFKS] marine metagenome; sea ice
376
452
+
Arg
TCT
[ENA]
¢þ
>WENV181322529
OFKS01006492
[OFKS] marine metagenome; sea ice
378
450
+
Asp
GTC
[ENA]
¢þ
>WENV181322528
OFKS01006116
[OFKS] marine metagenome; sea ice
423
347
-
Pro
GGG
[ENA]
¢þ
>WENV181322527
OFKS01006059
[OFKS] marine metagenome; sea ice
429
354
-
Asn
GTT
[ENA]
¢þ
>WENV181322516
OFKS01003162
[OFKS] marine metagenome; sea ice
437
523
+
Leu
GAG
[ENA]
¢þ
>WENV181322506
OFKS01001231
[OFKS] marine metagenome; sea ice
458
534
+
Ile2
CAT
[ENA]
¢þ
>WENV181322504
OFKS01000688
[OFKS] marine metagenome; sea ice
459
384
-
Phe
GAA
[ENA]
¢þ
>WENV181322518
OFKS01003418
[OFKS] marine metagenome; sea ice
459
386
-
Cys
GCA
[ENA]
¢þ
>WENV181322523
OFKS01004123
[OFKS] marine metagenome; sea ice
478
403
-
Asn
GTT
[ENA]
¢þ
>WENV181322533
OFKS01006883
[OFKS] marine metagenome; sea ice
503
430
-
Gly
CCC
[ENA]
¢þ
>WENV181322505
OFKS01001160
[OFKS] marine metagenome; sea ice
575
499
-
Arg
CCT
[ENA]
¢þ
>WENV181322517
OFKS01003418
[OFKS] marine metagenome; sea ice
601
526
-
Gly
GCC
[ENA]
¢þ
>WENV181322510
OFKS01001765
[OFKS] marine metagenome; sea ice
617
542
-
Lys
TTT
[ENA]
¢þ
>WENV181322502
OFKS01000519
[OFKS] marine metagenome; sea ice
788
712
-
Met
CAT
[ENA]
¢þ
>WENV181322501
OFKS01000377
[OFKS] marine metagenome; sea ice
1257
1184
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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