This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFLC] marine metagenome; melt pond
HIT:
114 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181324208
OFLC01007235
[OFLC] marine metagenome; melt pond
13
87
+
Val
CAC
[ENA]
¢þ
>WENV181324181
OFLC01003007
[OFLC] marine metagenome; melt pond
44
119
+
Val
CAC
[ENA]
¢þ
>WENV181324191
OFLC01003949
[OFLC] marine metagenome; melt pond
69
143
+
Val
CAC
[ENA]
¢þ
>WENV181324161
OFLC01001301
[OFLC] marine metagenome; melt pond
78
5
-
Gly
CCC
[ENA]
¢þ
>WENV181324198
OFLC01005521
[OFLC] marine metagenome; melt pond
116
189
+
Thr
CGT
[ENA]
¢þ
>WENV181324218
OFLC01011100
[OFLC] marine metagenome; melt pond
123
48
-
Ile2
CAT
[ENA]
¢þ
>WENV181324216
OFLC01009971
[OFLC] marine metagenome; melt pond
133
58
-
Glu
TTC
[ENA]
¢þ
>WENV181324225
OFLC01016967
[OFLC] marine metagenome; melt pond
136
209
+
Cys
GCA
[ENA]
¢þ
>WENV181324156
OFLC01001193
[OFLC] marine metagenome; melt pond
142
68
-
Pro
GGG
[ENA]
¢þ
>WENV181324151
OFLC01000962
[OFLC] marine metagenome; melt pond
149
75
-
fMet
CAT
[ENA]
¢þ
>WENV181324169
OFLC01002361
[OFLC] marine metagenome; melt pond
162
237
+
Gly
GCC
[ENA]
¢þ
>WENV181324194
OFLC01004890
[OFLC] marine metagenome; melt pond
170
241
+
Trp
CCA
[ENA]
¢þ
>WENV181324131
OFLC01000306
[OFLC] marine metagenome; melt pond
187
262
+
Leu
TAA
[ENA]
¢þ
>WENV181324164
OFLC01001956
[OFLC] marine metagenome; melt pond
201
274
+
Met
CAT
[ENA]
¢þ
>WENV181324196
OFLC01005231
[OFLC] marine metagenome; melt pond
215
140
-
Thr
CGT
[ENA]
¢þ
>WENV181324224
OFLC01015838
[OFLC] marine metagenome; melt pond
222
139
-
Ser
AGA
[ENA]
¢þ
>WENV181324221
OFLC01012879
[OFLC] marine metagenome; melt pond
233
161
-
Arg
TCT
[ENA]
¢þ
>WENV181324160
OFLC01001289
[OFLC] marine metagenome; melt pond
243
171
-
Arg
TCT
[ENA]
¢þ
>WENV181324170
OFLC01002361
[OFLC] marine metagenome; melt pond
249
335
+
Leu
TAA
[ENA]
¢þ
>WENV181324222
OFLC01014725
[OFLC] marine metagenome; melt pond
252
327
+
Ala
CGC
[ENA]
¢þ
>WENV181324211
OFLC01008960
[OFLC] marine metagenome; melt pond
266
177
-
Ser
GGA
[ENA]
¢þ
>WENV181324192
OFLC01004214
[OFLC] marine metagenome; melt pond
270
355
+
Ser
GGA
[ENA]
¢þ
>WENV181324174
OFLC01002737
[OFLC] marine metagenome; melt pond
273
347
+
Ile
AAT
[ENA]
¢þ
>WENV181324202
OFLC01006412
[OFLC] marine metagenome; melt pond
275
205
-
Gly
GCC
[ENA]
¢þ
>WENV181324163
OFLC01001580
[OFLC] marine metagenome; melt pond
279
195
-
Leu
CAA
[ENA]
¢þ
>WENV181324189
OFLC01003624
[OFLC] marine metagenome; melt pond
279
205
-
Lys
TTT
[ENA]
¢þ
>WENV181324219
OFLC01011987
[OFLC] marine metagenome; melt pond
300
218
-
Leu
CAA
[ENA]
¢þ
>WENV181324132
OFLC01000312
[OFLC] marine metagenome; melt pond
304
229
-
Lys
CTT
[ENA]
¢þ
>WENV181324203
OFLC01006510
[OFLC] marine metagenome; melt pond
304
233
-
Asp
GTC
[ENA]
¢þ
>WENV181324155
OFLC01001164
[OFLC] marine metagenome; melt pond
314
227
-
Ser
CGA
[ENA]
¢þ
>WENV181324213
OFLC01009384
[OFLC] marine metagenome; melt pond
319
245
-
Ala
TGC
[ENA]
¢þ
>WENV181324193
OFLC01004626
[OFLC] marine metagenome; melt pond
320
394
+
His
GTG
[ENA]
¢þ
>WENV181324173
OFLC01002645
[OFLC] marine metagenome; melt pond
322
398
+
Met
CAT
[ENA]
¢þ
>WENV181324220
OFLC01012879
[OFLC] marine metagenome; melt pond
333
262
-
Val
TAC
[ENA]
¢þ
>WENV181324172
OFLC01002441
[OFLC] marine metagenome; melt pond
339
266
-
Val
AAC
[ENA]
¢þ
>WENV181324153
OFLC01000985
[OFLC] marine metagenome; melt pond
348
275
-
Thr
TGT
[ENA]
¢þ
>WENV181324183
OFLC01003007
[OFLC] marine metagenome; melt pond
350
272
-
Leu
AAG
[ENA]
¢þ
>WENV181324188
OFLC01003624
[OFLC] marine metagenome; melt pond
370
297
-
Arg
CCT
[ENA]
¢þ
>WENV181324204
OFLC01006577
[OFLC] marine metagenome; melt pond
386
468
+
Leu
TAG
[ENA]
¢þ
>WENV181324215
OFLC01009971
[OFLC] marine metagenome; melt pond
390
315
-
Glu
TTC
[ENA]
¢þ
>WENV181324199
OFLC01005947
[OFLC] marine metagenome; melt pond
398
323
-
Thr
TGT
[ENA]
¢þ
>WENV181324226
OFLC01019138
[OFLC] marine metagenome; melt pond
408
335
-
Arg
TCT
[ENA]
¢þ
>WENV181324182
OFLC01003007
[OFLC] marine metagenome; melt pond
412
485
+
Trp
CCA
[ENA]
¢þ
>WENV181324210
OFLC01008745
[OFLC] marine metagenome; melt pond
419
494
+
Val
TAC
[ENA]
¢þ
>WENV181324223
OFLC01015838
[OFLC] marine metagenome; melt pond
420
346
-
Arg
ACG
[ENA]
¢þ
>WENV181324187
OFLC01003624
[OFLC] marine metagenome; melt pond
420
493
+
Glu
CTC
[ENA]
¢þ
>WENV181324200
OFLC01006257
[OFLC] marine metagenome; melt pond
432
507
+
Ala
GGC
[ENA]
¢þ
>WENV181324175
OFLC01002737
[OFLC] marine metagenome; melt pond
435
509
+
Lys
CTT
[ENA]
¢þ
>WENV181324190
OFLC01003939
[OFLC] marine metagenome; melt pond
448
376
-
Arg
CCT
[ENA]
¢þ
>WENV181324217
OFLC01011100
[OFLC] marine metagenome; melt pond
460
540
+
Leu
TAG
[ENA]
¢þ
>WENV181324159
OFLC01001289
[OFLC] marine metagenome; melt pond
462
383
-
Leu
CAG
[ENA]
¢þ
>WENV181324154
OFLC01001141
[OFLC] marine metagenome; melt pond
465
541
+
Ile2
CAT
[ENA]
¢þ
>WENV181324212
OFLC01009384
[OFLC] marine metagenome; melt pond
484
410
-
Ile
GAT
[ENA]
¢þ
>WENV181324184
OFLC01003126
[OFLC] marine metagenome; melt pond
486
563
+
Ile
GAT
[ENA]
¢þ
>WENV181324195
OFLC01004890
[OFLC] marine metagenome; melt pond
487
558
+
Pro
CGG
[ENA]
¢þ
>WENV181324205
OFLC01006625
[OFLC] marine metagenome; melt pond
491
565
+
Val
CAC
[ENA]
¢þ
>WENV181324162
OFLC01001525
[OFLC] marine metagenome; melt pond
498
427
-
Gly
GCC
[ENA]
¢þ
>WENV181324206
OFLC01006873
[OFLC] marine metagenome; melt pond
506
424
-
Ser
CGA
[ENA]
¢þ
>WENV181324176
OFLC01002737
[OFLC] marine metagenome; melt pond
516
588
+
Asn
GTT
[ENA]
¢þ
>WENV181324209
OFLC01007285
[OFLC] marine metagenome; melt pond
568
494
-
Arg
CCT
[ENA]
¢þ
>WENV181324201
OFLC01006257
[OFLC] marine metagenome; melt pond
576
651
+
Glu
TTC
[ENA]
¢þ
>WENV181324197
OFLC01005263
[OFLC] marine metagenome; melt pond
590
666
+
Arg
TCT
[ENA]
¢þ
>WENV181324179
OFLC01002906
[OFLC] marine metagenome; melt pond
600
675
+
Trp
CCA
[ENA]
¢þ
>WENV181324167
OFLC01002157
[OFLC] marine metagenome; melt pond
602
674
+
Gln
TTG
[ENA]
¢þ
>WENV181324185
OFLC01003126
[OFLC] marine metagenome; melt pond
603
676
+
Ala
TGC
[ENA]
¢þ
>WENV181324214
OFLC01009971
[OFLC] marine metagenome; melt pond
610
535
-
Glu
TTC
[ENA]
¢þ
>WENV181324143
OFLC01000479
[OFLC] marine metagenome; melt pond
641
570
-
Trp
CCA
[ENA]
¢þ
>WENV181324165
OFLC01001956
[OFLC] marine metagenome; melt pond
664
745
+
Leu
CAA
[ENA]
¢þ
>WENV181324207
OFLC01006900
[OFLC] marine metagenome; melt pond
690
618
-
Glu
CTC
[ENA]
¢þ
>WENV181324178
OFLC01002889
[OFLC] marine metagenome; melt pond
714
788
+
Asp
GTC
[ENA]
¢þ
>WENV181324180
OFLC01002936
[OFLC] marine metagenome; melt pond
737
662
-
Asn
GTT
[ENA]
¢þ
>WENV181324166
OFLC01001971
[OFLC] marine metagenome; melt pond
740
666
-
His
GTG
[ENA]
¢þ
>WENV181324186
OFLC01003434
[OFLC] marine metagenome; melt pond
746
835
+
Ser
GGA
[ENA]
¢þ
>WENV181324150
OFLC01000920
[OFLC] marine metagenome; melt pond
824
749
-
Ile
AAT
[ENA]
¢þ
>WENV181324171
OFLC01002378
[OFLC] marine metagenome; melt pond
852
927
+
Arg
CCG
[ENA]
¢þ
>WENV181324177
OFLC01002795
[OFLC] marine metagenome; melt pond
881
955
+
Val
CAC
[ENA]
¢þ
>WENV181324134
OFLC01000380
[OFLC] marine metagenome; melt pond
907
983
+
Lys
TTT
[ENA]
¢þ
>WENV181324144
OFLC01000505
[OFLC] marine metagenome; melt pond
926
999
+
Val
TAC
[ENA]
¢þ
>WENV181324158
OFLC01001289
[OFLC] marine metagenome; melt pond
955
884
-
Gln
CTG
[ENA]
¢þ
>WENV181324168
OFLC01002303
[OFLC] marine metagenome; melt pond
1020
946
-
Arg
TCG
[ENA]
¢þ
>WENV181324137
OFLC01000388
[OFLC] marine metagenome; melt pond
1082
1009
-
Ala
TGC
[ENA]
¢þ
>WENV181324117
OFLC01000038
[OFLC] marine metagenome; melt pond
1129
1211
+
Leu
CAA
[ENA]
¢þ
>WENV181324148
OFLC01000667
[OFLC] marine metagenome; melt pond
1136
1221
+
Tyr
GTA
[ENA]
¢þ
>WENV181324127
OFLC01000214
[OFLC] marine metagenome; melt pond
1179
1088
-
Ser
GCT
[ENA]
¢þ
>WENV181324136
OFLC01000388
[OFLC] marine metagenome; melt pond
1190
1116
-
Ile
GAT
[ENA]
¢þ
>WENV181324157
OFLC01001289
[OFLC] marine metagenome; melt pond
1290
1218
-
Val
CAC
[ENA]
¢þ
>WENV181324149
OFLC01000667
[OFLC] marine metagenome; melt pond
1333
1406
+
Gly
TCC
[ENA]
¢þ
>WENV181324152
OFLC01000968
[OFLC] marine metagenome; melt pond
1398
1472
+
Ala
GGC
[ENA]
¢þ
>WENV181324145
OFLC01000560
[OFLC] marine metagenome; melt pond
1403
1476
+
Trp
CCA
[ENA]
¢þ
>WENV181324133
OFLC01000327
[OFLC] marine metagenome; melt pond
1446
1372
-
Ala
GGC
[ENA]
¢þ
>WENV181324138
OFLC01000391
[OFLC] marine metagenome; melt pond
1584
1667
+
Leu
GAG
[ENA]
¢þ
>WENV181324122
OFLC01000152
[OFLC] marine metagenome; melt pond
1740
1666
-
Asp
GTC
[ENA]
¢þ
>WENV181324120
OFLC01000115
[OFLC] marine metagenome; melt pond
1802
1877
+
His
GTG
[ENA]
¢þ
>WENV181324121
OFLC01000152
[OFLC] marine metagenome; melt pond
1839
1764
-
Glu
TTC
[ENA]
¢þ
>WENV181324147
OFLC01000611
[OFLC] marine metagenome; melt pond
1991
1918
-
Gly
TCC
[ENA]
¢þ
>WENV181324142
OFLC01000479
[OFLC] marine metagenome; melt pond
2012
1940
-
Thr
GGT
[ENA]
¢þ
>WENV181324135
OFLC01000384
[OFLC] marine metagenome; melt pond
2051
2125
+
Ile2
CAT
[ENA]
¢þ
>WENV181324114
OFLC01000021
[OFLC] marine metagenome; melt pond
2060
1985
-
Ala
TGC
[ENA]
¢þ
>WENV181324146
OFLC01000611
[OFLC] marine metagenome; melt pond
2064
2138
+
Pro
TGG
[ENA]
¢þ
>WENV181324139
OFLC01000428
[OFLC] marine metagenome; melt pond
2120
2193
+
Glu
CTC
[ENA]
¢þ
>WENV181324141
OFLC01000479
[OFLC] marine metagenome; melt pond
2141
2060
-
Tyr
GTA
[ENA]
¢þ
>WENV181324113
OFLC01000021
[OFLC] marine metagenome; melt pond
2165
2089
-
Ile
GAT
[ENA]
¢þ
>WENV181324140
OFLC01000479
[OFLC] marine metagenome; melt pond
2270
2196
-
Thr
TGT
[ENA]
¢þ
>WENV181324126
OFLC01000214
[OFLC] marine metagenome; melt pond
2735
2648
-
Ser
TGA
[ENA]
¢þ
>WENV181324128
OFLC01000219
[OFLC] marine metagenome; melt pond
2784
2873
+
Ser
CGA
[ENA]
¢þ
>WENV181324123
OFLC01000180
[OFLC] marine metagenome; melt pond
2934
3006
+
Gly
GCC
[ENA]
¢þ
>WENV181324124
OFLC01000180
[OFLC] marine metagenome; melt pond
3031
3104
+
Cys
GCA
[ENA]
¢þ
>WENV181324125
OFLC01000180
[OFLC] marine metagenome; melt pond
3115
3190
+
Val
GAC
[ENA]
¢þ
>WENV181324130
OFLC01000236
[OFLC] marine metagenome; melt pond
3221
3134
-
Ser
GGA
[ENA]
¢þ
>WENV181324129
OFLC01000235
[OFLC] marine metagenome; melt pond
3449
3522
+
Arg
ACG
[ENA]
¢þ
>WENV181324119
OFLC01000045
[OFLC] marine metagenome; melt pond
4786
4712
-
Ala
TGC
[ENA]
¢þ
>WENV181324118
OFLC01000045
[OFLC] marine metagenome; melt pond
4964
4890
-
Ile
GAT
[ENA]
¢þ
>WENV181324116
OFLC01000028
[OFLC] marine metagenome; melt pond
5830
5914
+
Tyr
GTA
[ENA]
¢þ
>WENV181324115
OFLC01000025
[OFLC] marine metagenome; melt pond
6148
6230
+
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK