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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OFMY] sediment metagenome; Lake sediment
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181360682
OFMY01000279
[OFMY] sediment metagenome; Lake sediment
58
132
+
Gln
TTG
[ENA]
¢þ
>WENV181360683
OFMY01000515
[OFMY] sediment metagenome; Lake sediment
226
151
-
Thr
TGT
[ENA]
¢þ
>WENV181360688
OFMY01000797
[OFMY] sediment metagenome; Lake sediment
237
325
+
Ser
CGA
[ENA]
¢þ
>WENV181360693
OFMY01000917
[OFMY] sediment metagenome; Lake sediment
254
166
-
Tyr
GTA
[ENA]
¢þ
>WENV181360681
OFMY01000259
[OFMY] sediment metagenome; Lake sediment
293
217
-
Arg
CCT
[ENA]
¢þ
>WENV181360684
OFMY01000624
[OFMY] sediment metagenome; Lake sediment
300
381
+
Leu
TAA
[ENA]
¢þ
>WENV181360685
OFMY01000678
[OFMY] sediment metagenome; Lake sediment
326
401
+
Val
TAC
[ENA]
¢þ
>WENV181360690
OFMY01000808
[OFMY] sediment metagenome; Lake sediment
389
462
+
Phe
GAA
[ENA]
¢þ
>WENV181360686
OFMY01000678
[OFMY] sediment metagenome; Lake sediment
413
488
+
Lys
CTT
[ENA]
¢þ
>WENV181360691
OFMY01000877
[OFMY] sediment metagenome; Lake sediment
421
346
-
Asn
GTT
[ENA]
¢þ
>WENV181360692
OFMY01000917
[OFMY] sediment metagenome; Lake sediment
483
408
-
Ile
GAT
[ENA]
¢þ
>WENV181360687
OFMY01000678
[OFMY] sediment metagenome; Lake sediment
490
564
+
Lys
TTT
[ENA]
¢þ
>WENV181360680
OFMY01000259
[OFMY] sediment metagenome; Lake sediment
492
417
-
Gln
CTG
[ENA]
¢þ
>WENV181360689
OFMY01000797
[OFMY] sediment metagenome; Lake sediment
499
571
+
Arg
TCT
[ENA]
¢þ
>WENV181360679
OFMY01000259
[OFMY] sediment metagenome; Lake sediment
568
494
-
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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