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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OFNA] sediment metagenome; Lake sediment
HIT:
6 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181360800
OFNA01000522
[OFNA] sediment metagenome; Lake sediment
139
66
-
Val
TAC
[ENA]
¢þ
>WENV181360796
OFNA01000253
[OFNA] sediment metagenome; Lake sediment
179
105
-
Gln
TTG
[ENA]
¢þ
>WENV181360798
OFNA01000371
[OFNA] sediment metagenome; Lake sediment
291
217
-
Pro
CGG
[ENA]
¢þ
>WENV181360797
OFNA01000279
[OFNA] sediment metagenome; Lake sediment
404
476
+
Gly
GCC
[ENA]
¢þ
>WENV181360795
OFNA01000062
[OFNA] sediment metagenome; Lake sediment
476
560
+
Leu
CAA
[ENA]
¢þ
>WENV181360799
OFNA01000500
[OFNA] sediment metagenome; Lake sediment
486
413
-
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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