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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OFNL] sediment metagenome; Lake sediment
HIT:
13 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181361185
OFNL01000196
[OFNL] sediment metagenome; Lake sediment
32
117
+
Ser
GCT
[ENA]
¢þ
>WENV181361194
OFNL01000732
[OFNL] sediment metagenome; Lake sediment
87
161
+
Pro
TGG
[ENA]
¢þ
>WENV181361195
OFNL01000904
[OFNL] sediment metagenome; Lake sediment
142
226
+
Leu
TAG
[ENA]
¢þ
>WENV181361190
OFNL01000385
[OFNL] sediment metagenome; Lake sediment
148
76
-
Gly
TCC
[ENA]
¢þ
>WENV181361196
OFNL01000950
[OFNL] sediment metagenome; Lake sediment
245
331
+
Leu
GAG
[ENA]
¢þ
>WENV181361192
OFNL01000525
[OFNL] sediment metagenome; Lake sediment
253
180
-
Val
GAC
[ENA]
¢þ
>WENV181361184
OFNL01000082
[OFNL] sediment metagenome; Lake sediment
254
330
+
Ile
TAT
[ENA]
¢þ
>WENV181361193
OFNL01000661
[OFNL] sediment metagenome; Lake sediment
269
185
-
Leu
CAA
[ENA]
¢þ
>WENV181361191
OFNL01000517
[OFNL] sediment metagenome; Lake sediment
275
201
-
Glu
CTC
[ENA]
¢þ
>WENV181361187
OFNL01000272
[OFNL] sediment metagenome; Lake sediment
619
693
+
Pro
CGG
[ENA]
¢þ
>WENV181361189
OFNL01000330
[OFNL] sediment metagenome; Lake sediment
800
725
-
Lys
TTT
[ENA]
¢þ
>WENV181361186
OFNL01000230
[OFNL] sediment metagenome; Lake sediment
821
747
-
Gln
TTG
[ENA]
¢þ
>WENV181361188
OFNL01000294
[OFNL] sediment metagenome; Lake sediment
854
784
-
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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