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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OFNT] sediment metagenome; Lake sediment
HIT:
7 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181361409
OFNT01001319
[OFNT] sediment metagenome; Lake sediment
72
144
+
Gly
TCC
[ENA]
¢þ
>WENV181361408
OFNT01001162
[OFNT] sediment metagenome; Lake sediment
78
151
+
Ile
TAT
[ENA]
¢þ
>WENV181361410
OFNT01001319
[OFNT] sediment metagenome; Lake sediment
371
445
+
Asn
GTT
[ENA]
¢þ
>WENV181361407
OFNT01001011
[OFNT] sediment metagenome; Lake sediment
597
521
-
Ile
TAT
[ENA]
¢þ
>WENV181361406
OFNT01000038
[OFNT] sediment metagenome; Lake sediment
3205
3118
-
Tyr
GTA
[ENA]
¢þ
>WENV181361405
OFNT01000038
[OFNT] sediment metagenome; Lake sediment
3296
3207
-
Ser
CGA
[ENA]
¢þ
>WENV181361404
OFNT01000038
[OFNT] sediment metagenome; Lake sediment
3373
3299
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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