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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFOB] sediment metagenome; Lake sediment
HIT:
111 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181361621
OFOB01002557
[OFOB] sediment metagenome; Lake sediment
6
80
+
Asn
GTT
[ENA]
¢þ
>WENV181361576
OFOB01000422
[OFOB] sediment metagenome; Lake sediment
72
145
+
Gln
TTG
[ENA]
¢þ
>WENV181361606
OFOB01001438
[OFOB] sediment metagenome; Lake sediment
80
158
+
Pro
GGG
[ENA]
¢þ
>WENV181361617
OFOB01002252
[OFOB] sediment metagenome; Lake sediment
109
185
+
Thr
CGT
[ENA]
¢þ
>WENV181361598
OFOB01001214
[OFOB] sediment metagenome; Lake sediment
109
195
+
Leu
GAG
[ENA]
¢þ
>WENV181361593
OFOB01000777
[OFOB] sediment metagenome; Lake sediment
110
185
+
Gln
TTG
[ENA]
¢þ
>WENV181361613
OFOB01001974
[OFOB] sediment metagenome; Lake sediment
135
211
+
Pro
CGG
[ENA]
¢þ
>WENV181361608
OFOB01001451
[OFOB] sediment metagenome; Lake sediment
137
53
-
Ser
GCT
[ENA]
¢þ
>WENV181361622
OFOB01002598
[OFOB] sediment metagenome; Lake sediment
145
218
+
Glu
TTC
[ENA]
¢þ
>WENV181361570
OFOB01000264
[OFOB] sediment metagenome; Lake sediment
155
245
+
Tyr
GTA
[ENA]
¢þ
>WENV181361577
OFOB01000422
[OFOB] sediment metagenome; Lake sediment
156
230
+
Gln
CTG
[ENA]
¢þ
>WENV181361620
OFOB01002444
[OFOB] sediment metagenome; Lake sediment
162
77
-
Leu
TAG
[ENA]
¢þ
>WENV181361552
OFOB01000168
[OFOB] sediment metagenome; Lake sediment
189
260
+
Pro
TGG
[ENA]
¢þ
>WENV181361618
OFOB01002277
[OFOB] sediment metagenome; Lake sediment
193
269
+
Met
CAT
[ENA]
¢þ
>WENV181361607
OFOB01001450
[OFOB] sediment metagenome; Lake sediment
201
126
-
His
GTG
[ENA]
¢þ
>WENV181361586
OFOB01000550
[OFOB] sediment metagenome; Lake sediment
208
133
-
Gly
GCC
[ENA]
¢þ
>WENV181361587
OFOB01000628
[OFOB] sediment metagenome; Lake sediment
222
147
-
Asp
ATC
[ENA]
¢þ
>WENV181361612
OFOB01001894
[OFOB] sediment metagenome; Lake sediment
246
171
-
Gln
TTG
[ENA]
¢þ
>WENV181361609
OFOB01001600
[OFOB] sediment metagenome; Lake sediment
259
184
-
Met
CAT
[ENA]
¢þ
>WENV181361623
OFOB01002598
[OFOB] sediment metagenome; Lake sediment
263
339
+
Met
CAT
[ENA]
¢þ
>WENV181361614
OFOB01002017
[OFOB] sediment metagenome; Lake sediment
277
351
+
Glu
TTC
[ENA]
¢þ
>WENV181361582
OFOB01000473
[OFOB] sediment metagenome; Lake sediment
278
362
+
Leu
TAG
[ENA]
¢þ
>WENV181361619
OFOB01002277
[OFOB] sediment metagenome; Lake sediment
280
364
+
Tyr
GTA
[ENA]
¢þ
>WENV181361603
OFOB01001235
[OFOB] sediment metagenome; Lake sediment
284
208
-
Ala
TGC
[ENA]
¢þ
>WENV181361596
OFOB01000951
[OFOB] sediment metagenome; Lake sediment
290
206
-
Ser
GGA
[ENA]
¢þ
>WENV181361588
OFOB01000632
[OFOB] sediment metagenome; Lake sediment
290
218
-
Ile
AAT
[ENA]
¢þ
>WENV181361578
OFOB01000439
[OFOB] sediment metagenome; Lake sediment
306
379
+
Ala
TGC
[ENA]
¢þ
>WENV181361611
OFOB01001863
[OFOB] sediment metagenome; Lake sediment
352
438
+
Asn
GTT
[ENA]
¢þ
>WENV181361616
OFOB01002151
[OFOB] sediment metagenome; Lake sediment
356
284
-
Ala
TGC
[ENA]
¢þ
>WENV181361559
OFOB01000192
[OFOB] sediment metagenome; Lake sediment
356
431
+
Phe
GAA
[ENA]
¢þ
>WENV181361599
OFOB01001214
[OFOB] sediment metagenome; Lake sediment
356
445
+
Leu
CAG
[ENA]
¢þ
>WENV181361605
OFOB01001359
[OFOB] sediment metagenome; Lake sediment
370
294
-
Ile
GAT
[ENA]
¢þ
>WENV181361567
OFOB01000246
[OFOB] sediment metagenome; Lake sediment
382
308
-
Phe
GAA
[ENA]
¢þ
>WENV181361585
OFOB01000550
[OFOB] sediment metagenome; Lake sediment
387
316
-
Arg
ACG
[ENA]
¢þ
>WENV181361595
OFOB01000951
[OFOB] sediment metagenome; Lake sediment
388
300
-
Ser
TGA
[ENA]
¢þ
>WENV181361563
OFOB01000202
[OFOB] sediment metagenome; Lake sediment
433
508
+
Ile
GAT
[ENA]
¢þ
>WENV181361615
OFOB01002151
[OFOB] sediment metagenome; Lake sediment
444
357
-
Ser
TGA
[ENA]
¢þ
>WENV181361600
OFOB01001214
[OFOB] sediment metagenome; Lake sediment
457
541
+
Tyr
GTA
[ENA]
¢þ
>WENV181361610
OFOB01001809
[OFOB] sediment metagenome; Lake sediment
489
560
+
Val
TAC
[ENA]
¢þ
>WENV181361564
OFOB01000202
[OFOB] sediment metagenome; Lake sediment
525
617
+
Ser
GCT
[ENA]
¢þ
>WENV181361601
OFOB01001214
[OFOB] sediment metagenome; Lake sediment
568
651
+
Leu
TAA
[ENA]
¢þ
>WENV181361550
OFOB01000120
[OFOB] sediment metagenome; Lake sediment
616
529
-
Leu
TAA
[ENA]
¢þ
>WENV181361604
OFOB01001317
[OFOB] sediment metagenome; Lake sediment
661
588
-
Leu
CAA
[ENA]
¢þ
>WENV181361560
OFOB01000192
[OFOB] sediment metagenome; Lake sediment
682
754
+
Asp
GTC
[ENA]
¢þ
>WENV181361602
OFOB01001214
[OFOB] sediment metagenome; Lake sediment
706
790
+
Leu
CAA
[ENA]
¢þ
>WENV181361592
OFOB01000747
[OFOB] sediment metagenome; Lake sediment
731
656
-
Gly
TCC
[ENA]
¢þ
>WENV181361584
OFOB01000550
[OFOB] sediment metagenome; Lake sediment
736
664
-
Thr
CGT
[ENA]
¢þ
>WENV181361589
OFOB01000665
[OFOB] sediment metagenome; Lake sediment
757
671
-
Tyr
GTA
[ENA]
¢þ
>WENV181361561
OFOB01000192
[OFOB] sediment metagenome; Lake sediment
764
837
+
Met
CAT
[ENA]
¢þ
>WENV181361597
OFOB01001033
[OFOB] sediment metagenome; Lake sediment
803
727
-
Arg
ACG
[ENA]
¢þ
>WENV181361594
OFOB01000951
[OFOB] sediment metagenome; Lake sediment
822
736
-
Leu
CAA
[ENA]
¢þ
>WENV181361539
OFOB01000031
[OFOB] sediment metagenome; Lake sediment
930
855
-
Arg
ACG
[ENA]
¢þ
>WENV181361581
OFOB01000463
[OFOB] sediment metagenome; Lake sediment
938
864
-
Ala
CGC
[ENA]
¢þ
>WENV181361583
OFOB01000550
[OFOB] sediment metagenome; Lake sediment
949
876
-
Gly
TCC
[ENA]
¢þ
>WENV181361591
OFOB01000747
[OFOB] sediment metagenome; Lake sediment
954
880
-
Glu
TTC
[ENA]
¢þ
>WENV181361580
OFOB01000463
[OFOB] sediment metagenome; Lake sediment
1022
944
-
Ala
TGC
[ENA]
¢þ
>WENV181361590
OFOB01000747
[OFOB] sediment metagenome; Lake sediment
1029
957
-
Glu
CTC
[ENA]
¢þ
>WENV181361566
OFOB01000231
[OFOB] sediment metagenome; Lake sediment
1059
986
-
Thr
GGT
[ENA]
¢þ
>WENV181361572
OFOB01000361
[OFOB] sediment metagenome; Lake sediment
1075
1000
-
Lys
CTT
[ENA]
¢þ
>WENV181361562
OFOB01000192
[OFOB] sediment metagenome; Lake sediment
1094
1169
+
fMet
CAT
[ENA]
¢þ
>WENV181361513
OFOB01000017
[OFOB] sediment metagenome; Lake sediment
1339
1414
+
Arg
ACG
[ENA]
¢þ
>WENV181361579
OFOB01000439
[OFOB] sediment metagenome; Lake sediment
1344
1424
+
Leu
TAA
[ENA]
¢þ
>WENV181361575
OFOB01000420
[OFOB] sediment metagenome; Lake sediment
1396
1324
-
Trp
CCA
[ENA]
¢þ
>WENV181361574
OFOB01000420
[OFOB] sediment metagenome; Lake sediment
1481
1405
-
Asp
GTC
[ENA]
¢þ
>WENV181361568
OFOB01000251
[OFOB] sediment metagenome; Lake sediment
1576
1651
+
Gln
TTG
[ENA]
¢þ
>WENV181361573
OFOB01000420
[OFOB] sediment metagenome; Lake sediment
1579
1504
-
Gln
CTG
[ENA]
¢þ
>WENV181361565
OFOB01000231
[OFOB] sediment metagenome; Lake sediment
1581
1495
-
Trp
CCA
[ENA]
¢þ
>WENV181361549
OFOB01000120
[OFOB] sediment metagenome; Lake sediment
1603
1529
-
Ala
TGC
[ENA]
¢þ
>WENV181361555
OFOB01000191
[OFOB] sediment metagenome; Lake sediment
1639
1713
+
Trp
CCA
[ENA]
¢þ
>WENV181361571
OFOB01000264
[OFOB] sediment metagenome; Lake sediment
1713
1788
+
Trp
CCA
[ENA]
¢þ
>WENV181361556
OFOB01000191
[OFOB] sediment metagenome; Lake sediment
1727
1799
+
Thr
GGT
[ENA]
¢þ
>WENV181361553
OFOB01000180
[OFOB] sediment metagenome; Lake sediment
1793
1879
+
Ile
GAT
[ENA]
¢þ
>WENV181361557
OFOB01000191
[OFOB] sediment metagenome; Lake sediment
1807
1890
+
Ser
TGA
[ENA]
¢þ
>WENV181361558
OFOB01000191
[OFOB] sediment metagenome; Lake sediment
1998
2075
+
His
GTG
[ENA]
¢þ
>WENV181361543
OFOB01000063
[OFOB] sediment metagenome; Lake sediment
2005
1924
-
Pro
TGG
[ENA]
¢þ
>WENV181361538
OFOB01000031
[OFOB] sediment metagenome; Lake sediment
2068
1993
-
Lys
TTT
[ENA]
¢þ
>WENV181361554
OFOB01000180
[OFOB] sediment metagenome; Lake sediment
2196
2270
+
Ile
GAT
[ENA]
¢þ
>WENV181361544
OFOB01000085
[OFOB] sediment metagenome; Lake sediment
2237
2315
+
Lys
CTT
[ENA]
¢þ
>WENV181361569
OFOB01000251
[OFOB] sediment metagenome; Lake sediment
2256
2332
+
Pro
CGG
[ENA]
¢þ
>WENV181361542
OFOB01000063
[OFOB] sediment metagenome; Lake sediment
2293
2223
-
Gln
CTG
[ENA]
¢þ
>WENV181361537
OFOB01000031
[OFOB] sediment metagenome; Lake sediment
2373
2297
-
Thr
CGT
[ENA]
¢þ
>WENV181361541
OFOB01000063
[OFOB] sediment metagenome; Lake sediment
2652
2577
-
Gln
TTG
[ENA]
¢þ
>WENV181361540
OFOB01000063
[OFOB] sediment metagenome; Lake sediment
2747
2660
-
Asn
GTT
[ENA]
¢þ
>WENV181361536
OFOB01000031
[OFOB] sediment metagenome; Lake sediment
2808
2732
-
Val
GAC
[ENA]
¢þ
>WENV181361535
OFOB01000031
[OFOB] sediment metagenome; Lake sediment
2893
2817
-
Val
CAC
[ENA]
¢þ
>WENV181361548
OFOB01000119
[OFOB] sediment metagenome; Lake sediment
2960
2874
-
Leu
TAA
[ENA]
¢þ
>WENV181361545
OFOB01000110
[OFOB] sediment metagenome; Lake sediment
3310
3386
+
Asp
GTC
[ENA]
¢þ
>WENV181361546
OFOB01000110
[OFOB] sediment metagenome; Lake sediment
3403
3477
+
Met
CAT
[ENA]
¢þ
>WENV181361551
OFOB01000141
[OFOB] sediment metagenome; Lake sediment
3500
3413
-
Ser
GCT
[ENA]
¢þ
>WENV181361547
OFOB01000110
[OFOB] sediment metagenome; Lake sediment
3568
3644
+
Ile
GAT
[ENA]
¢þ
>WENV181361534
OFOB01000031
[OFOB] sediment metagenome; Lake sediment
3891
3808
-
Ser
CGA
[ENA]
¢þ
>WENV181361533
OFOB01000031
[OFOB] sediment metagenome; Lake sediment
4121
4050
-
Lys
CTT
[ENA]
¢þ
>WENV181361532
OFOB01000031
[OFOB] sediment metagenome; Lake sediment
4831
4755
-
Arg
CCT
[ENA]
¢þ
>WENV181361514
OFOB01000028
[OFOB] sediment metagenome; Lake sediment
6518
6590
+
Cys
GCA
[ENA]
¢þ
>WENV181361531
OFOB01000031
[OFOB] sediment metagenome; Lake sediment
7106
7032
-
Gly
TCC
[ENA]
¢þ
>WENV181361515
OFOB01000028
[OFOB] sediment metagenome; Lake sediment
7303
7378
+
Trp
CCA
[ENA]
¢þ
>WENV181361516
OFOB01000028
[OFOB] sediment metagenome; Lake sediment
7389
7461
+
Ala
TGC
[ENA]
¢þ
>WENV181361517
OFOB01000028
[OFOB] sediment metagenome; Lake sediment
7673
7746
+
Glu
TTC
[ENA]
¢þ
>WENV181361518
OFOB01000028
[OFOB] sediment metagenome; Lake sediment
7756
7830
+
Gly
GCC
[ENA]
¢þ
>WENV181361519
OFOB01000028
[OFOB] sediment metagenome; Lake sediment
7836
7910
+
Val
TAC
[ENA]
¢þ
>WENV181361530
OFOB01000031
[OFOB] sediment metagenome; Lake sediment
7845
7770
-
Gly
CCC
[ENA]
¢þ
>WENV181361520
OFOB01000028
[OFOB] sediment metagenome; Lake sediment
8011
8094
+
Leu
TAG
[ENA]
¢þ
>WENV181361521
OFOB01000028
[OFOB] sediment metagenome; Lake sediment
8105
8176
+
Gly
CCC
[ENA]
¢þ
>WENV181361522
OFOB01000028
[OFOB] sediment metagenome; Lake sediment
8273
8357
+
Leu
TAA
[ENA]
¢þ
>WENV181361523
OFOB01000028
[OFOB] sediment metagenome; Lake sediment
8591
8673
+
Tyr
GTA
[ENA]
¢þ
>WENV181361529
OFOB01000031
[OFOB] sediment metagenome; Lake sediment
8600
8526
-
Gly
GCC
[ENA]
¢þ
>WENV181361524
OFOB01000028
[OFOB] sediment metagenome; Lake sediment
9263
9337
+
Lys
TTT
[ENA]
¢þ
>WENV181361525
OFOB01000028
[OFOB] sediment metagenome; Lake sediment
9352
9422
+
Lys
CTT
[ENA]
¢þ
>WENV181361528
OFOB01000031
[OFOB] sediment metagenome; Lake sediment
9372
9294
-
Arg
TCT
[ENA]
¢þ
>WENV181361526
OFOB01000028
[OFOB] sediment metagenome; Lake sediment
9434
9514
+
Leu
CAA
[ENA]
¢þ
>WENV181361527
OFOB01000028
[OFOB] sediment metagenome; Lake sediment
10758
10830
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK