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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OFOJ] sediment metagenome; Lake sediment
HIT:
24 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181361795
OFOJ01000765
[OFOJ] sediment metagenome; Lake sediment
43
119
+
Thr
TGT
[ENA]
¢þ
>WENV181361803
OFOJ01001657
[OFOJ] sediment metagenome; Lake sediment
85
1
-
Leu
CAG
[ENA]
¢þ
>WENV181361808
OFOJ01002359
[OFOJ] sediment metagenome; Lake sediment
140
68
-
Gly
TCC
[ENA]
¢þ
>WENV181361811
OFOJ01002670
[OFOJ] sediment metagenome; Lake sediment
147
60
-
Leu
TAG
[ENA]
¢þ
>WENV181361794
OFOJ01000758
[OFOJ] sediment metagenome; Lake sediment
171
249
+
fMet
CAT
[ENA]
¢þ
>WENV181361800
OFOJ01001535
[OFOJ] sediment metagenome; Lake sediment
206
131
-
His
GTG
[ENA]
¢þ
>WENV181361799
OFOJ01001397
[OFOJ] sediment metagenome; Lake sediment
215
298
+
Gly
TCC
[ENA]
¢þ
>WENV181361802
OFOJ01001540
[OFOJ] sediment metagenome; Lake sediment
231
158
-
Phe
GAA
[ENA]
¢þ
>WENV181361809
OFOJ01002396
[OFOJ] sediment metagenome; Lake sediment
232
307
+
Gly
GCC
[ENA]
¢þ
>WENV181361810
OFOJ01002670
[OFOJ] sediment metagenome; Lake sediment
264
340
+
Thr
GGT
[ENA]
¢þ
>WENV181361796
OFOJ01000971
[OFOJ] sediment metagenome; Lake sediment
265
352
+
Leu
CAA
[ENA]
¢þ
>WENV181361804
OFOJ01001815
[OFOJ] sediment metagenome; Lake sediment
300
206
-
Lys
TTT
[ENA]
¢þ
>WENV181361801
OFOJ01001540
[OFOJ] sediment metagenome; Lake sediment
320
246
-
Tyr
GTA
[ENA]
¢þ
>WENV181361806
OFOJ01002123
[OFOJ] sediment metagenome; Lake sediment
423
346
-
Ile
GAT
[ENA]
¢þ
>WENV181361807
OFOJ01002301
[OFOJ] sediment metagenome; Lake sediment
440
512
+
Ala
GGC
[ENA]
¢þ
>WENV181361805
OFOJ01001834
[OFOJ] sediment metagenome; Lake sediment
491
409
-
Leu
CAA
[ENA]
¢þ
>WENV181361797
OFOJ01001058
[OFOJ] sediment metagenome; Lake sediment
505
433
-
Ala
TGC
[ENA]
¢þ
>WENV181361793
OFOJ01000754
[OFOJ] sediment metagenome; Lake sediment
516
589
+
Val
CAC
[ENA]
¢þ
>WENV181361798
OFOJ01001351
[OFOJ] sediment metagenome; Lake sediment
616
543
-
Val
GAC
[ENA]
¢þ
>WENV181361790
OFOJ01000356
[OFOJ] sediment metagenome; Lake sediment
686
757
+
Gly
CCC
[ENA]
¢þ
>WENV181361792
OFOJ01000462
[OFOJ] sediment metagenome; Lake sediment
768
691
-
Met
CAT
[ENA]
¢þ
>WENV181361791
OFOJ01000462
[OFOJ] sediment metagenome; Lake sediment
847
775
-
Asn
GTT
[ENA]
¢þ
>WENV181361788
OFOJ01000058
[OFOJ] sediment metagenome; Lake sediment
876
949
+
Pro
CGG
[ENA]
¢þ
>WENV181361789
OFOJ01000150
[OFOJ] sediment metagenome; Lake sediment
1133
1058
-
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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