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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OFOP] sediment metagenome; Lake sediment
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181363061
OFOP01001375
[OFOP] sediment metagenome; Lake sediment
324
399
+
Thr
TGT
[ENA]
¢þ
>WENV181363057
OFOP01000116
[OFOP] sediment metagenome; Lake sediment
363
276
-
Tyr
GTA
[ENA]
¢þ
>WENV181363056
OFOP01000116
[OFOP] sediment metagenome; Lake sediment
454
365
-
Ser
CGA
[ENA]
¢þ
>WENV181363060
OFOP01001156
[OFOP] sediment metagenome; Lake sediment
463
536
+
Met
CAT
[ENA]
¢þ
>WENV181363062
OFOP01001734
[OFOP] sediment metagenome; Lake sediment
482
408
-
Asn
GTT
[ENA]
¢þ
>WENV181363055
OFOP01000116
[OFOP] sediment metagenome; Lake sediment
531
457
-
fMet
CAT
[ENA]
¢þ
>WENV181363059
OFOP01000858
[OFOP] sediment metagenome; Lake sediment
660
589
-
Gln
TTG
[ENA]
¢þ
>WENV181363058
OFOP01000213
[OFOP] sediment metagenome; Lake sediment
1399
1471
+
Gly
TCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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