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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OFOY] sediment metagenome; Lake sediment
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181364573
OFOY01001033
[OFOY] sediment metagenome; Lake sediment
8
80
+
Cys
GCA
[ENA]
¢þ
>WENV181364570
OFOY01000089
[OFOY] sediment metagenome; Lake sediment
64
139
+
Trp
CCA
[ENA]
¢þ
>WENV181364574
OFOY01001033
[OFOY] sediment metagenome; Lake sediment
171
253
+
Leu
TAG
[ENA]
¢þ
>WENV181364575
OFOY01001033
[OFOY] sediment metagenome; Lake sediment
259
344
+
Leu
TAA
[ENA]
¢þ
>WENV181364569
OFOY01000072
[OFOY] sediment metagenome; Lake sediment
300
227
-
Gly
TCC
[ENA]
¢þ
>WENV181364568
OFOY01000072
[OFOY] sediment metagenome; Lake sediment
455
370
-
Tyr
GTA
[ENA]
¢þ
>WENV181364558
OFOY01000048
[OFOY] sediment metagenome; Lake sediment
857
782
-
Ala
TGC
[ENA]
¢þ
>WENV181364557
OFOY01000048
[OFOY] sediment metagenome; Lake sediment
958
882
-
Ile
GAT
[ENA]
¢þ
>WENV181364572
OFOY01000240
[OFOY] sediment metagenome; Lake sediment
1149
1222
+
Gly
CCC
[ENA]
¢þ
>WENV181364551
OFOY01000028
[OFOY] sediment metagenome; Lake sediment
2073
1986
-
Ser
TGA
[ENA]
¢þ
>WENV181364563
OFOY01000060
[OFOY] sediment metagenome; Lake sediment
2705
2631
-
Arg
CCT
[ENA]
¢þ
>WENV181364571
OFOY01000103
[OFOY] sediment metagenome; Lake sediment
3925
4011
+
Leu
TAG
[ENA]
¢þ
>WENV181364553
OFOY01000032
[OFOY] sediment metagenome; Lake sediment
5306
5381
+
Val
TAC
[ENA]
¢þ
>WENV181364554
OFOY01000032
[OFOY] sediment metagenome; Lake sediment
7409
7484
+
His
GTG
[ENA]
¢þ
>WENV181364546
OFOY01000021
[OFOY] sediment metagenome; Lake sediment
10089
9997
-
Ser
GCT
[ENA]
¢þ
>WENV181364550
OFOY01000027
[OFOY] sediment metagenome; Lake sediment
10623
10547
-
Gln
TTG
[ENA]
¢þ
>WENV181364545
OFOY01000019
[OFOY] sediment metagenome; Lake sediment
11264
11189
-
Lys
TTT
[ENA]
¢þ
>WENV181364562
OFOY01000056
[OFOY] sediment metagenome; Lake sediment
11321
11245
-
Pro
CGG
[ENA]
¢þ
>WENV181364567
OFOY01000070
[OFOY] sediment metagenome; Lake sediment
12163
12088
-
Phe
GAA
[ENA]
¢þ
>WENV181364561
OFOY01000055
[OFOY] sediment metagenome; Lake sediment
16209
16133
-
Asp
GTC
[ENA]
¢þ
>WENV181364560
OFOY01000055
[OFOY] sediment metagenome; Lake sediment
16377
16302
-
Glu
TTC
[ENA]
¢þ
>WENV181364559
OFOY01000055
[OFOY] sediment metagenome; Lake sediment
16486
16411
-
Ala
GGC
[ENA]
¢þ
>WENV181364566
OFOY01000067
[OFOY] sediment metagenome; Lake sediment
17010
16917
-
Leu
TAA
[ENA]
¢þ
>WENV181364565
OFOY01000067
[OFOY] sediment metagenome; Lake sediment
17204
17129
-
Gly
GCC
[ENA]
¢þ
>WENV181364564
OFOY01000067
[OFOY] sediment metagenome; Lake sediment
17286
17213
-
Cys
GCA
[ENA]
¢þ
>WENV181364532
OFOY01000003
[OFOY] sediment metagenome; Lake sediment
17350
17426
+
Pro
TGG
[ENA]
¢þ
>WENV181364556
OFOY01000037
[OFOY] sediment metagenome; Lake sediment
20722
20795
+
Gly
CCC
[ENA]
¢þ
>WENV181364548
OFOY01000027
[OFOY] sediment metagenome; Lake sediment
22220
22296
+
Ile2
CAT
[ENA]
¢þ
>WENV181364549
OFOY01000027
[OFOY] sediment metagenome; Lake sediment
22501
22577
+
Arg
ACG
[ENA]
¢þ
>WENV181364533
OFOY01000003
[OFOY] sediment metagenome; Lake sediment
26545
26621
+
Arg
TCT
[ENA]
¢þ
>WENV181364539
OFOY01000007
[OFOY] sediment metagenome; Lake sediment
28508
28592
+
Leu
CAA
[ENA]
¢þ
>WENV181364543
OFOY01000015
[OFOY] sediment metagenome; Lake sediment
30119
30030
-
Ser
GGA
[ENA]
¢þ
>WENV181364555
OFOY01000035
[OFOY] sediment metagenome; Lake sediment
31642
31717
+
Arg
CCG
[ENA]
¢þ
>WENV181364552
OFOY01000031
[OFOY] sediment metagenome; Lake sediment
31849
31925
+
Met
CAT
[ENA]
¢þ
>WENV181364544
OFOY01000016
[OFOY] sediment metagenome; Lake sediment
40804
40728
-
fMet
CAT
[ENA]
¢þ
>WENV181364547
OFOY01000023
[OFOY] sediment metagenome; Lake sediment
43809
43884
+
Thr
TGT
[ENA]
¢þ
>WENV181364541
OFOY01000008
[OFOY] sediment metagenome; Lake sediment
44351
44255
-
SeC
TCA
[ENA]
¢þ
>WENV181364542
OFOY01000014
[OFOY] sediment metagenome; Lake sediment
50450
50539
+
Ser
CGA
[ENA]
¢þ
>WENV181364537
OFOY01000005
[OFOY] sediment metagenome; Lake sediment
54076
54001
-
Asn
GTT
[ENA]
¢þ
>WENV181364540
OFOY01000008
[OFOY] sediment metagenome; Lake sediment
55074
54999
-
Lys
CTT
[ENA]
¢þ
>WENV181364531
OFOY01000001
[OFOY] sediment metagenome; Lake sediment
58431
58355
-
Pro
GGG
[ENA]
¢þ
>WENV181364538
OFOY01000006
[OFOY] sediment metagenome; Lake sediment
58541
58625
+
Leu
GAG
[ENA]
¢þ
>WENV181364535
OFOY01000004
[OFOY] sediment metagenome; Lake sediment
72529
72615
+
Leu
CAG
[ENA]
¢þ
>WENV181364536
OFOY01000004
[OFOY] sediment metagenome; Lake sediment
74956
74880
-
Val
GAC
[ENA]
¢þ
>WENV181364534
OFOY01000003
[OFOY] sediment metagenome; Lake sediment
87558
87632
+
Val
CAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK