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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFPB] sediment metagenome; Lake sediment
HIT:
53 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181364738
OFPB01000653
[OFPB] sediment metagenome; Lake sediment
124
210
+
Leu
GAG
[ENA]
¢þ
>WENV181364741
OFPB01000788
[OFPB] sediment metagenome; Lake sediment
146
74
-
Tyr
GTA
[ENA]
¢þ
>WENV181364742
OFPB01001272
[OFPB] sediment metagenome; Lake sediment
258
332
+
Gln
CTG
[ENA]
¢þ
>WENV181364732
OFPB01000252
[OFPB] sediment metagenome; Lake sediment
260
333
+
Trp
CCA
[ENA]
¢þ
>WENV181364739
OFPB01000653
[OFPB] sediment metagenome; Lake sediment
321
395
+
Pro
CGG
[ENA]
¢þ
>WENV181364743
OFPB01001272
[OFPB] sediment metagenome; Lake sediment
344
417
+
Pro
CGG
[ENA]
¢þ
>WENV181364740
OFPB01000653
[OFPB] sediment metagenome; Lake sediment
402
475
+
Met
CAT
[ENA]
¢þ
>WENV181364733
OFPB01000252
[OFPB] sediment metagenome; Lake sediment
418
492
+
Gln
CTG
[ENA]
¢þ
>WENV181364737
OFPB01000357
[OFPB] sediment metagenome; Lake sediment
562
486
-
Arg
ACG
[ENA]
¢þ
>WENV181364734
OFPB01000252
[OFPB] sediment metagenome; Lake sediment
568
643
+
fMet
CAT
[ENA]
¢þ
>WENV181364735
OFPB01000252
[OFPB] sediment metagenome; Lake sediment
645
718
+
Ala
TGC
[ENA]
¢þ
>WENV181364736
OFPB01000252
[OFPB] sediment metagenome; Lake sediment
727
810
+
Tyr
GTA
[ENA]
¢þ
>WENV181364726
OFPB01000054
[OFPB] sediment metagenome; Lake sediment
2705
2631
-
Arg
CCT
[ENA]
¢þ
>WENV181364728
OFPB01000064
[OFPB] sediment metagenome; Lake sediment
2793
2697
-
SeC
TCA
[ENA]
¢þ
>WENV181364724
OFPB01000050
[OFPB] sediment metagenome; Lake sediment
4757
4832
+
Phe
GAA
[ENA]
¢þ
>WENV181364713
OFPB01000023
[OFPB] sediment metagenome; Lake sediment
6281
6195
-
Leu
TAG
[ENA]
¢þ
>WENV181364709
OFPB01000017
[OFPB] sediment metagenome; Lake sediment
6358
6274
-
Leu
GAG
[ENA]
¢þ
>WENV181364731
OFPB01000086
[OFPB] sediment metagenome; Lake sediment
8796
8703
-
Leu
TAA
[ENA]
¢þ
>WENV181364730
OFPB01000086
[OFPB] sediment metagenome; Lake sediment
8990
8915
-
Gly
GCC
[ENA]
¢þ
>WENV181364729
OFPB01000086
[OFPB] sediment metagenome; Lake sediment
9072
8999
-
Cys
GCA
[ENA]
¢þ
>WENV181364700
OFPB01000008
[OFPB] sediment metagenome; Lake sediment
11312
11236
-
Pro
CGG
[ENA]
¢þ
>WENV181364703
OFPB01000009
[OFPB] sediment metagenome; Lake sediment
13039
12964
-
Trp
CCA
[ENA]
¢þ
>WENV181364727
OFPB01000064
[OFPB] sediment metagenome; Lake sediment
13516
13441
-
Lys
CTT
[ENA]
¢þ
>WENV181364702
OFPB01000009
[OFPB] sediment metagenome; Lake sediment
14499
14426
-
Gly
TCC
[ENA]
¢þ
>WENV181364701
OFPB01000009
[OFPB] sediment metagenome; Lake sediment
14654
14569
-
Tyr
GTA
[ENA]
¢þ
>WENV181364722
OFPB01000048
[OFPB] sediment metagenome; Lake sediment
16201
16125
-
Asp
GTC
[ENA]
¢þ
>WENV181364721
OFPB01000048
[OFPB] sediment metagenome; Lake sediment
16369
16294
-
Glu
TTC
[ENA]
¢þ
>WENV181364720
OFPB01000048
[OFPB] sediment metagenome; Lake sediment
16478
16403
-
Ala
GGC
[ENA]
¢þ
>WENV181364717
OFPB01000033
[OFPB] sediment metagenome; Lake sediment
17826
17750
-
Arg
ACG
[ENA]
¢þ
>WENV181364716
OFPB01000033
[OFPB] sediment metagenome; Lake sediment
18107
18031
-
Ile2
CAT
[ENA]
¢þ
>WENV181364725
OFPB01000053
[OFPB] sediment metagenome; Lake sediment
20009
19934
-
Asn
GTT
[ENA]
¢þ
>WENV181364719
OFPB01000041
[OFPB] sediment metagenome; Lake sediment
20722
20795
+
Gly
CCC
[ENA]
¢þ
>WENV181364714
OFPB01000028
[OFPB] sediment metagenome; Lake sediment
22307
22396
+
Ser
GGA
[ENA]
¢þ
>WENV181364712
OFPB01000023
[OFPB] sediment metagenome; Lake sediment
22788
22696
-
Ser
GCT
[ENA]
¢þ
>WENV181364723
OFPB01000049
[OFPB] sediment metagenome; Lake sediment
23392
23479
+
Ser
TGA
[ENA]
¢þ
>WENV181364699
OFPB01000007
[OFPB] sediment metagenome; Lake sediment
25187
25262
+
Lys
TTT
[ENA]
¢þ
>WENV181364711
OFPB01000022
[OFPB] sediment metagenome; Lake sediment
26576
26492
-
Leu
CAA
[ENA]
¢þ
>WENV181364707
OFPB01000011
[OFPB] sediment metagenome; Lake sediment
28167
28092
-
His
GTG
[ENA]
¢þ
>WENV181364715
OFPB01000033
[OFPB] sediment metagenome; Lake sediment
29704
29780
+
Gln
TTG
[ENA]
¢þ
>WENV181364706
OFPB01000011
[OFPB] sediment metagenome; Lake sediment
30270
30195
-
Val
TAC
[ENA]
¢þ
>WENV181364718
OFPB01000039
[OFPB] sediment metagenome; Lake sediment
31641
31716
+
Arg
CCG
[ENA]
¢þ
>WENV181364698
OFPB01000006
[OFPB] sediment metagenome; Lake sediment
34102
34026
-
Met
CAT
[ENA]
¢þ
>WENV181364694
OFPB01000002
[OFPB] sediment metagenome; Lake sediment
34595
34521
-
Val
CAC
[ENA]
¢þ
>WENV181364710
OFPB01000021
[OFPB] sediment metagenome; Lake sediment
40807
40731
-
fMet
CAT
[ENA]
¢þ
>WENV181364695
OFPB01000004
[OFPB] sediment metagenome; Lake sediment
70038
70124
+
Leu
CAG
[ENA]
¢þ
>WENV181364691
OFPB01000001
[OFPB] sediment metagenome; Lake sediment
71340
71416
+
Pro
GGG
[ENA]
¢þ
>WENV181364708
OFPB01000012
[OFPB] sediment metagenome; Lake sediment
72095
72184
+
Ser
CGA
[ENA]
¢þ
>WENV181364696
OFPB01000004
[OFPB] sediment metagenome; Lake sediment
72465
72389
-
Val
GAC
[ENA]
¢þ
>WENV181364704
OFPB01000010
[OFPB] sediment metagenome; Lake sediment
77292
77368
+
Ile
GAT
[ENA]
¢þ
>WENV181364705
OFPB01000010
[OFPB] sediment metagenome; Lake sediment
77393
77468
+
Ala
TGC
[ENA]
¢þ
>WENV181364693
OFPB01000002
[OFPB] sediment metagenome; Lake sediment
95608
95532
-
Arg
TCT
[ENA]
¢þ
>WENV181364692
OFPB01000002
[OFPB] sediment metagenome; Lake sediment
104803
104727
-
Pro
TGG
[ENA]
¢þ
>WENV181364697
OFPB01000006
[OFPB] sediment metagenome; Lake sediment
109733
109808
+
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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