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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFPL] sediment metagenome; Lake sediment
HIT:
60 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181365211
OFPL01000663
[OFPL] sediment metagenome; Lake sediment
8
84
+
Arg
ACG
[ENA]
¢þ
>WENV181365221
OFPL01001990
[OFPL] sediment metagenome; Lake sediment
29
104
+
Trp
CCA
[ENA]
¢þ
>WENV181365162
OFPL01000001
[OFPL] sediment metagenome; Lake sediment
139
225
+
Leu
CAG
[ENA]
¢þ
>WENV181365215
OFPL01000895
[OFPL] sediment metagenome; Lake sediment
156
66
-
Ser
GCT
[ENA]
¢þ
>WENV181365216
OFPL01001029
[OFPL] sediment metagenome; Lake sediment
187
263
+
Ile
GAT
[ENA]
¢þ
>WENV181365217
OFPL01001029
[OFPL] sediment metagenome; Lake sediment
269
344
+
Ala
TGC
[ENA]
¢þ
>WENV181365219
OFPL01001699
[OFPL] sediment metagenome; Lake sediment
285
199
-
Leu
CAA
[ENA]
¢þ
>WENV181365210
OFPL01000569
[OFPL] sediment metagenome; Lake sediment
331
247
-
Leu
TAG
[ENA]
¢þ
>WENV181365218
OFPL01001165
[OFPL] sediment metagenome; Lake sediment
441
354
-
Ser
TGA
[ENA]
¢þ
>WENV181365202
OFPL01000158
[OFPL] sediment metagenome; Lake sediment
573
649
+
Ile
GAT
[ENA]
¢þ
>WENV181365220
OFPL01001703
[OFPL] sediment metagenome; Lake sediment
619
523
-
SeC
TCA
[ENA]
¢þ
>WENV181365203
OFPL01000158
[OFPL] sediment metagenome; Lake sediment
674
749
+
Ala
TGC
[ENA]
¢þ
>WENV181365213
OFPL01000763
[OFPL] sediment metagenome; Lake sediment
903
987
+
Tyr
GTA
[ENA]
¢þ
>WENV181365209
OFPL01000566
[OFPL] sediment metagenome; Lake sediment
905
989
+
Leu
CAG
[ENA]
¢þ
>WENV181365204
OFPL01000189
[OFPL] sediment metagenome; Lake sediment
1030
1104
+
Gln
TTG
[ENA]
¢þ
>WENV181365214
OFPL01000763
[OFPL] sediment metagenome; Lake sediment
1093
1166
+
Gly
TCC
[ENA]
¢þ
>WENV181365212
OFPL01000663
[OFPL] sediment metagenome; Lake sediment
1175
1250
+
Gly
GCC
[ENA]
¢þ
>WENV181365206
OFPL01000391
[OFPL] sediment metagenome; Lake sediment
1317
1242
-
Arg
CCT
[ENA]
¢þ
>WENV181365208
OFPL01000523
[OFPL] sediment metagenome; Lake sediment
1551
1475
-
Met
CAT
[ENA]
¢þ
>WENV181365207
OFPL01000434
[OFPL] sediment metagenome; Lake sediment
1687
1762
+
Lys
TTT
[ENA]
¢þ
>WENV181365205
OFPL01000191
[OFPL] sediment metagenome; Lake sediment
1816
1729
-
Leu
TAA
[ENA]
¢þ
>WENV181365199
OFPL01000069
[OFPL] sediment metagenome; Lake sediment
2061
1974
-
Ser
TGA
[ENA]
¢þ
>WENV181365188
OFPL01000036
[OFPL] sediment metagenome; Lake sediment
2257
2332
+
Val
TAC
[ENA]
¢þ
>WENV181365164
OFPL01000001
[OFPL] sediment metagenome; Lake sediment
2566
2490
-
Val
GAC
[ENA]
¢þ
>WENV181365197
OFPL01000063
[OFPL] sediment metagenome; Lake sediment
2705
2631
-
Arg
CCT
[ENA]
¢þ
>WENV181365189
OFPL01000036
[OFPL] sediment metagenome; Lake sediment
4360
4435
+
His
GTG
[ENA]
¢þ
>WENV181365185
OFPL01000030
[OFPL] sediment metagenome; Lake sediment
10205
10130
-
Lys
CTT
[ENA]
¢þ
>WENV181365195
OFPL01000045
[OFPL] sediment metagenome; Lake sediment
10623
10547
-
Gln
TTG
[ENA]
¢þ
>WENV181365200
OFPL01000076
[OFPL] sediment metagenome; Lake sediment
12396
12481
+
Tyr
GTA
[ENA]
¢þ
>WENV181365201
OFPL01000076
[OFPL] sediment metagenome; Lake sediment
12551
12624
+
Gly
TCC
[ENA]
¢þ
>WENV181365179
OFPL01000012
[OFPL] sediment metagenome; Lake sediment
13179
13106
-
Gly
CCC
[ENA]
¢þ
>WENV181365198
OFPL01000064
[OFPL] sediment metagenome; Lake sediment
15526
15430
-
SeC
TCA
[ENA]
¢þ
>WENV181365192
OFPL01000044
[OFPL] sediment metagenome; Lake sediment
16218
16142
-
Asp
GTC
[ENA]
¢þ
>WENV181365191
OFPL01000044
[OFPL] sediment metagenome; Lake sediment
16386
16311
-
Glu
TTC
[ENA]
¢þ
>WENV181365190
OFPL01000044
[OFPL] sediment metagenome; Lake sediment
16495
16420
-
Ala
GGC
[ENA]
¢þ
>WENV181365178
OFPL01000010
[OFPL] sediment metagenome; Lake sediment
17020
16927
-
Leu
TAA
[ENA]
¢þ
>WENV181365177
OFPL01000010
[OFPL] sediment metagenome; Lake sediment
17214
17139
-
Gly
GCC
[ENA]
¢þ
>WENV181365176
OFPL01000010
[OFPL] sediment metagenome; Lake sediment
17296
17223
-
Cys
GCA
[ENA]
¢þ
>WENV181365175
OFPL01000010
[OFPL] sediment metagenome; Lake sediment
17446
17371
-
Gly
GCC
[ENA]
¢þ
>WENV181365169
OFPL01000004
[OFPL] sediment metagenome; Lake sediment
17742
17826
+
Leu
CAA
[ENA]
¢þ
>WENV181365196
OFPL01000055
[OFPL] sediment metagenome; Lake sediment
20024
19949
-
Asn
GTT
[ENA]
¢þ
>WENV181365187
OFPL01000033
[OFPL] sediment metagenome; Lake sediment
20658
20583
-
Phe
GAA
[ENA]
¢þ
>WENV181365193
OFPL01000045
[OFPL] sediment metagenome; Lake sediment
22220
22296
+
Ile2
CAT
[ENA]
¢þ
>WENV181365181
OFPL01000018
[OFPL] sediment metagenome; Lake sediment
22307
22396
+
Ser
GGA
[ENA]
¢þ
>WENV181365194
OFPL01000045
[OFPL] sediment metagenome; Lake sediment
22501
22577
+
Arg
ACG
[ENA]
¢þ
>WENV181365174
OFPL01000010
[OFPL] sediment metagenome; Lake sediment
23680
23594
-
Leu
TAG
[ENA]
¢þ
>WENV181365183
OFPL01000022
[OFPL] sediment metagenome; Lake sediment
31642
31717
+
Arg
CCG
[ENA]
¢þ
>WENV181365180
OFPL01000015
[OFPL] sediment metagenome; Lake sediment
32535
32460
-
Lys
TTT
[ENA]
¢þ
>WENV181365184
OFPL01000024
[OFPL] sediment metagenome; Lake sediment
34652
34578
-
Val
CAC
[ENA]
¢þ
>WENV181365186
OFPL01000033
[OFPL] sediment metagenome; Lake sediment
38436
38361
-
Trp
CCA
[ENA]
¢þ
>WENV181365172
OFPL01000006
[OFPL] sediment metagenome; Lake sediment
39727
39651
-
Arg
TCT
[ENA]
¢þ
>WENV181365173
OFPL01000010
[OFPL] sediment metagenome; Lake sediment
40187
40095
-
Ser
GCT
[ENA]
¢þ
>WENV181365182
OFPL01000020
[OFPL] sediment metagenome; Lake sediment
40850
40774
-
fMet
CAT
[ENA]
¢þ
>WENV181365171
OFPL01000006
[OFPL] sediment metagenome; Lake sediment
48922
48846
-
Pro
TGG
[ENA]
¢þ
>WENV181365165
OFPL01000002
[OFPL] sediment metagenome; Lake sediment
48922
48998
+
Pro
CGG
[ENA]
¢þ
>WENV181365167
OFPL01000002
[OFPL] sediment metagenome; Lake sediment
61639
61564
-
Thr
TGT
[ENA]
¢þ
>WENV181365168
OFPL01000003
[OFPL] sediment metagenome; Lake sediment
67344
67268
-
Pro
GGG
[ENA]
¢þ
>WENV181365163
OFPL01000001
[OFPL] sediment metagenome; Lake sediment
89745
89661
-
Leu
GAG
[ENA]
¢þ
>WENV181365170
OFPL01000004
[OFPL] sediment metagenome; Lake sediment
116515
116604
+
Ser
CGA
[ENA]
¢þ
>WENV181365166
OFPL01000002
[OFPL] sediment metagenome; Lake sediment
137269
137345
+
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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