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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OFPO] sediment metagenome; Lake sediment
HIT:
57 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181365352
OFPO01001447
[OFPO] sediment metagenome; Lake sediment
8
81
+
Trp
CCA
[ENA]
¢þ
>WENV181365348
OFPO01001077
[OFPO] sediment metagenome; Lake sediment
42
133
+
Ser
GCT
[ENA]
¢þ
>WENV181365357
OFPO01001928
[OFPO] sediment metagenome; Lake sediment
51
127
+
Ile
GAT
[ENA]
¢þ
>WENV181365356
OFPO01001724
[OFPO] sediment metagenome; Lake sediment
96
182
+
Ser
TGA
[ENA]
¢þ
>WENV181365353
OFPO01001447
[OFPO] sediment metagenome; Lake sediment
97
173
+
Pro
TGG
[ENA]
¢þ
>WENV181365358
OFPO01001928
[OFPO] sediment metagenome; Lake sediment
143
218
+
Ala
TGC
[ENA]
¢þ
>WENV181365354
OFPO01001447
[OFPO] sediment metagenome; Lake sediment
183
258
+
Phe
GAA
[ENA]
¢þ
>WENV181365359
OFPO01002112
[OFPO] sediment metagenome; Lake sediment
245
321
+
Ile2
CAT
[ENA]
¢þ
>WENV181365355
OFPO01001447
[OFPO] sediment metagenome; Lake sediment
348
423
+
Glu
TTC
[ENA]
¢þ
>WENV181365360
OFPO01002476
[OFPO] sediment metagenome; Lake sediment
361
436
+
Asp
GTC
[ENA]
¢þ
>WENV181365349
OFPO01001077
[OFPO] sediment metagenome; Lake sediment
443
520
+
Lys
TTT
[ENA]
¢þ
>WENV181365347
OFPO01000870
[OFPO] sediment metagenome; Lake sediment
523
447
-
fMet
CAT
[ENA]
¢þ
>WENV181365350
OFPO01001077
[OFPO] sediment metagenome; Lake sediment
539
612
+
Asn
GTT
[ENA]
¢þ
>WENV181365342
OFPO01000214
[OFPO] sediment metagenome; Lake sediment
579
655
+
Ile
GAT
[ENA]
¢þ
>WENV181365346
OFPO01000577
[OFPO] sediment metagenome; Lake sediment
587
495
-
Leu
TAA
[ENA]
¢þ
>WENV181365351
OFPO01001222
[OFPO] sediment metagenome; Lake sediment
628
553
-
Arg
TCT
[ENA]
¢þ
>WENV181365343
OFPO01000214
[OFPO] sediment metagenome; Lake sediment
680
755
+
Ala
TGC
[ENA]
¢þ
>WENV181365345
OFPO01000577
[OFPO] sediment metagenome; Lake sediment
835
761
-
Ile
GAT
[ENA]
¢þ
>WENV181365344
OFPO01000577
[OFPO] sediment metagenome; Lake sediment
918
844
-
Met
CAT
[ENA]
¢þ
>WENV181365337
OFPO01000187
[OFPO] sediment metagenome; Lake sediment
1430
1355
-
Thr
TGT
[ENA]
¢þ
>WENV181365340
OFPO01000205
[OFPO] sediment metagenome; Lake sediment
2292
2206
-
Leu
TAG
[ENA]
¢þ
>WENV181365341
OFPO01000212
[OFPO] sediment metagenome; Lake sediment
2571
2475
-
SeC
TCA
[ENA]
¢þ
>WENV181365333
OFPO01000100
[OFPO] sediment metagenome; Lake sediment
3047
2958
-
Ser
CGA
[ENA]
¢þ
>WENV181365336
OFPO01000177
[OFPO] sediment metagenome; Lake sediment
3138
3227
+
Ser
GGA
[ENA]
¢þ
>WENV181365319
OFPO01000039
[OFPO] sediment metagenome; Lake sediment
3530
3604
+
Val
CAC
[ENA]
¢þ
>WENV181365327
OFPO01000064
[OFPO] sediment metagenome; Lake sediment
3548
3473
-
Arg
CCG
[ENA]
¢þ
>WENV181365324
OFPO01000056
[OFPO] sediment metagenome; Lake sediment
3957
4032
+
Gly
GCC
[ENA]
¢þ
>WENV181365325
OFPO01000056
[OFPO] sediment metagenome; Lake sediment
4151
4244
+
Leu
TAA
[ENA]
¢þ
>WENV181365320
OFPO01000047
[OFPO] sediment metagenome; Lake sediment
4504
4428
-
Met
CAT
[ENA]
¢þ
>WENV181365338
OFPO01000196
[OFPO] sediment metagenome; Lake sediment
4720
4805
+
Tyr
GTA
[ENA]
¢þ
>WENV181365329
OFPO01000073
[OFPO] sediment metagenome; Lake sediment
4755
4830
+
Phe
GAA
[ENA]
¢þ
>WENV181365339
OFPO01000196
[OFPO] sediment metagenome; Lake sediment
4875
4948
+
Gly
TCC
[ENA]
¢þ
>WENV181365323
OFPO01000054
[OFPO] sediment metagenome; Lake sediment
6665
6590
-
Lys
CTT
[ENA]
¢þ
>WENV181365335
OFPO01000117
[OFPO] sediment metagenome; Lake sediment
7188
7272
+
Leu
CAA
[ENA]
¢þ
>WENV181365326
OFPO01000063
[OFPO] sediment metagenome; Lake sediment
8970
8894
-
fMet
CAT
[ENA]
¢þ
>WENV181365311
OFPO01000019
[OFPO] sediment metagenome; Lake sediment
9075
9150
+
Ala
GGC
[ENA]
¢þ
>WENV181365312
OFPO01000019
[OFPO] sediment metagenome; Lake sediment
9184
9259
+
Glu
TTC
[ENA]
¢þ
>WENV181365313
OFPO01000019
[OFPO] sediment metagenome; Lake sediment
9352
9428
+
Asp
GTC
[ENA]
¢þ
>WENV181365308
OFPO01000014
[OFPO] sediment metagenome; Lake sediment
11241
11165
-
Pro
CGG
[ENA]
¢þ
>WENV181365332
OFPO01000098
[OFPO] sediment metagenome; Lake sediment
11843
11930
+
Ser
TGA
[ENA]
¢þ
>WENV181365334
OFPO01000104
[OFPO] sediment metagenome; Lake sediment
12998
12923
-
Trp
CCA
[ENA]
¢þ
>WENV181365328
OFPO01000068
[OFPO] sediment metagenome; Lake sediment
13217
13144
-
Gly
CCC
[ENA]
¢þ
>WENV181365330
OFPO01000076
[OFPO] sediment metagenome; Lake sediment
13948
14022
+
Arg
CCT
[ENA]
¢þ
>WENV181365331
OFPO01000077
[OFPO] sediment metagenome; Lake sediment
14153
14078
-
Asn
GTT
[ENA]
¢þ
>WENV181365314
OFPO01000024
[OFPO] sediment metagenome; Lake sediment
14173
14097
-
Pro
GGG
[ENA]
¢þ
>WENV181365321
OFPO01000050
[OFPO] sediment metagenome; Lake sediment
15618
15694
+
Val
GAC
[ENA]
¢þ
>WENV181365307
OFPO01000007
[OFPO] sediment metagenome; Lake sediment
15756
15680
-
Gln
TTG
[ENA]
¢þ
>WENV181365309
OFPO01000017
[OFPO] sediment metagenome; Lake sediment
17350
17426
+
Pro
TGG
[ENA]
¢þ
>WENV181365317
OFPO01000032
[OFPO] sediment metagenome; Lake sediment
17458
17550
+
Ser
GCT
[ENA]
¢þ
>WENV181365322
OFPO01000050
[OFPO] sediment metagenome; Lake sediment
18045
17959
-
Leu
CAG
[ENA]
¢þ
>WENV181365304
OFPO01000001
[OFPO] sediment metagenome; Lake sediment
22338
22254
-
Leu
GAG
[ENA]
¢þ
>WENV181365315
OFPO01000027
[OFPO] sediment metagenome; Lake sediment
25198
25273
+
Lys
TTT
[ENA]
¢þ
>WENV181365310
OFPO01000017
[OFPO] sediment metagenome; Lake sediment
26545
26621
+
Arg
TCT
[ENA]
¢þ
>WENV181365305
OFPO01000007
[OFPO] sediment metagenome; Lake sediment
27353
27429
+
Ile2
CAT
[ENA]
¢þ
>WENV181365306
OFPO01000007
[OFPO] sediment metagenome; Lake sediment
27634
27710
+
Arg
ACG
[ENA]
¢þ
>WENV181365316
OFPO01000030
[OFPO] sediment metagenome; Lake sediment
28115
28040
-
His
GTG
[ENA]
¢þ
>WENV181365318
OFPO01000033
[OFPO] sediment metagenome; Lake sediment
28400
28475
+
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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