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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OFPR] sediment metagenome; Lake sediment
HIT:
88 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181365509
OFPR01003276
[OFPR] sediment metagenome; Lake sediment
27
101
+
Arg
CCT
[ENA]
¢þ
>WENV181365436
OFPR01000052
[OFPR] sediment metagenome; Lake sediment
42
117
+
Trp
CCA
[ENA]
¢þ
>WENV181365481
OFPR01001156
[OFPR] sediment metagenome; Lake sediment
79
155
+
Lys
TTT
[ENA]
¢þ
>WENV181365502
OFPR01002710
[OFPR] sediment metagenome; Lake sediment
79
155
+
Arg
CCG
[ENA]
¢þ
>WENV181365474
OFPR01000816
[OFPR] sediment metagenome; Lake sediment
101
176
+
Gly
GCC
[ENA]
¢þ
>WENV181365487
OFPR01001829
[OFPR] sediment metagenome; Lake sediment
113
184
+
Val
TAC
[ENA]
¢þ
>WENV181365510
OFPR01003875
[OFPR] sediment metagenome; Lake sediment
118
203
+
Ser
GGA
[ENA]
¢þ
>WENV181365467
OFPR01000695
[OFPR] sediment metagenome; Lake sediment
146
62
-
Leu
GAG
[ENA]
¢þ
>WENV181365503
OFPR01002932
[OFPR] sediment metagenome; Lake sediment
196
269
+
Gly
TCC
[ENA]
¢þ
>WENV181365511
OFPR01003875
[OFPR] sediment metagenome; Lake sediment
205
290
+
Ser
GCT
[ENA]
¢þ
>WENV181365501
OFPR01002661
[OFPR] sediment metagenome; Lake sediment
258
174
-
Tyr
GTA
[ENA]
¢þ
>WENV181365475
OFPR01000816
[OFPR] sediment metagenome; Lake sediment
263
336
+
Cys
GCA
[ENA]
¢þ
>WENV181365450
OFPR01000190
[OFPR] sediment metagenome; Lake sediment
280
205
-
Thr
CGT
[ENA]
¢þ
>WENV181365495
OFPR01002389
[OFPR] sediment metagenome; Lake sediment
311
384
+
Pro
GGG
[ENA]
¢þ
>WENV181365500
OFPR01002661
[OFPR] sediment metagenome; Lake sediment
342
271
-
Gly
GCC
[ENA]
¢þ
>WENV181365504
OFPR01002932
[OFPR] sediment metagenome; Lake sediment
352
426
+
Asp
GTC
[ENA]
¢þ
>WENV181365446
OFPR01000139
[OFPR] sediment metagenome; Lake sediment
355
431
+
Val
GAC
[ENA]
¢þ
>WENV181365448
OFPR01000146
[OFPR] sediment metagenome; Lake sediment
372
461
+
Ser
TGA
[ENA]
¢þ
>WENV181365496
OFPR01002389
[OFPR] sediment metagenome; Lake sediment
387
460
+
Val
GAC
[ENA]
¢þ
>WENV181365493
OFPR01002147
[OFPR] sediment metagenome; Lake sediment
394
320
-
Gln
CTG
[ENA]
¢þ
>WENV181365476
OFPR01000816
[OFPR] sediment metagenome; Lake sediment
409
501
+
Leu
TAA
[ENA]
¢þ
>WENV181365499
OFPR01002661
[OFPR] sediment metagenome; Lake sediment
428
354
-
Trp
CCA
[ENA]
¢þ
>WENV181365505
OFPR01002932
[OFPR] sediment metagenome; Lake sediment
428
502
+
Gln
CTG
[ENA]
¢þ
>WENV181365455
OFPR01000276
[OFPR] sediment metagenome; Lake sediment
463
387
-
fMet
CAT
[ENA]
¢þ
>WENV181365492
OFPR01002147
[OFPR] sediment metagenome; Lake sediment
484
412
-
Lys
CTT
[ENA]
¢þ
>WENV181365494
OFPR01002322
[OFPR] sediment metagenome; Lake sediment
491
575
+
Leu
GAG
[ENA]
¢þ
>WENV181365466
OFPR01000695
[OFPR] sediment metagenome; Lake sediment
539
456
-
Leu
CAG
[ENA]
¢þ
>WENV181365472
OFPR01000762
[OFPR] sediment metagenome; Lake sediment
546
472
-
His
GTG
[ENA]
¢þ
>WENV181365491
OFPR01002147
[OFPR] sediment metagenome; Lake sediment
565
491
-
Lys
TTT
[ENA]
¢þ
>WENV181365507
OFPR01002943
[OFPR] sediment metagenome; Lake sediment
569
642
+
Val
TAC
[ENA]
¢þ
>WENV181365456
OFPR01000395
[OFPR] sediment metagenome; Lake sediment
571
498
-
Arg
TCT
[ENA]
¢þ
>WENV181365488
OFPR01001829
[OFPR] sediment metagenome; Lake sediment
575
648
+
Ile
GAT
[ENA]
¢þ
>WENV181365506
OFPR01002932
[OFPR] sediment metagenome; Lake sediment
587
664
+
fMet
CAT
[ENA]
¢þ
>WENV181365508
OFPR01003212
[OFPR] sediment metagenome; Lake sediment
591
519
-
Ile
GAT
[ENA]
¢þ
>WENV181365490
OFPR01001928
[OFPR] sediment metagenome; Lake sediment
592
676
+
Leu
CAA
[ENA]
¢þ
>WENV181365480
OFPR01000960
[OFPR] sediment metagenome; Lake sediment
599
523
-
Pro
GGG
[ENA]
¢þ
>WENV181365465
OFPR01000695
[OFPR] sediment metagenome; Lake sediment
625
552
-
Phe
GAA
[ENA]
¢þ
>WENV181365427
OFPR01000012
[OFPR] sediment metagenome; Lake sediment
640
712
+
Gly
CCC
[ENA]
¢þ
>WENV181365498
OFPR01002465
[OFPR] sediment metagenome; Lake sediment
676
751
+
Arg
CCG
[ENA]
¢þ
>WENV181365497
OFPR01002389
[OFPR] sediment metagenome; Lake sediment
699
772
+
Met
CAT
[ENA]
¢þ
>WENV181365489
OFPR01001829
[OFPR] sediment metagenome; Lake sediment
727
800
+
Arg
TCG
[ENA]
¢þ
>WENV181365482
OFPR01001156
[OFPR] sediment metagenome; Lake sediment
800
884
+
Leu
CAA
[ENA]
¢þ
>WENV181365471
OFPR01000762
[OFPR] sediment metagenome; Lake sediment
820
748
-
Pro
TGG
[ENA]
¢þ
>WENV181365449
OFPR01000160
[OFPR] sediment metagenome; Lake sediment
847
773
-
Val
CAC
[ENA]
¢þ
>WENV181365486
OFPR01001633
[OFPR] sediment metagenome; Lake sediment
906
830
-
Arg
ACG
[ENA]
¢þ
>WENV181365473
OFPR01000799
[OFPR] sediment metagenome; Lake sediment
964
1039
+
Gly
GCC
[ENA]
¢þ
>WENV181365483
OFPR01001156
[OFPR] sediment metagenome; Lake sediment
971
1058
+
Leu
CAG
[ENA]
¢þ
>WENV181365464
OFPR01000695
[OFPR] sediment metagenome; Lake sediment
981
910
-
Glu
TTC
[ENA]
¢þ
>WENV181365428
OFPR01000012
[OFPR] sediment metagenome; Lake sediment
1005
1080
+
Arg
CCG
[ENA]
¢þ
>WENV181365460
OFPR01000653
[OFPR] sediment metagenome; Lake sediment
1049
963
-
Leu
TAG
[ENA]
¢þ
>WENV181365437
OFPR01000068
[OFPR] sediment metagenome; Lake sediment
1050
975
-
Thr
TGT
[ENA]
¢þ
>WENV181365454
OFPR01000253
[OFPR] sediment metagenome; Lake sediment
1086
1162
+
Ile2
CAT
[ENA]
¢þ
>WENV181365429
OFPR01000012
[OFPR] sediment metagenome; Lake sediment
1100
1175
+
Arg
CCT
[ENA]
¢þ
>WENV181365451
OFPR01000199
[OFPR] sediment metagenome; Lake sediment
1129
1204
+
Ala
GGC
[ENA]
¢þ
>WENV181365484
OFPR01001156
[OFPR] sediment metagenome; Lake sediment
1141
1224
+
Leu
GAG
[ENA]
¢þ
>WENV181365441
OFPR01000136
[OFPR] sediment metagenome; Lake sediment
1150
1223
+
Arg
ACG
[ENA]
¢þ
>WENV181365459
OFPR01000641
[OFPR] sediment metagenome; Lake sediment
1154
1246
+
Ser
GCT
[ENA]
¢þ
>WENV181365430
OFPR01000012
[OFPR] sediment metagenome; Lake sediment
1187
1260
+
Arg
TCG
[ENA]
¢þ
>WENV181365477
OFPR01000890
[OFPR] sediment metagenome; Lake sediment
1190
1275
+
Tyr
GTA
[ENA]
¢þ
>WENV181365485
OFPR01001156
[OFPR] sediment metagenome; Lake sediment
1232
1306
+
Pro
CGG
[ENA]
¢þ
>WENV181365452
OFPR01000199
[OFPR] sediment metagenome; Lake sediment
1237
1312
+
Glu
TTC
[ENA]
¢þ
>WENV181365479
OFPR01000907
[OFPR] sediment metagenome; Lake sediment
1239
1164
-
His
GTG
[ENA]
¢þ
>WENV181365463
OFPR01000695
[OFPR] sediment metagenome; Lake sediment
1252
1180
-
fMet
CAT
[ENA]
¢þ
>WENV181365470
OFPR01000762
[OFPR] sediment metagenome; Lake sediment
1307
1232
-
Ile
GAT
[ENA]
¢þ
>WENV181365478
OFPR01000890
[OFPR] sediment metagenome; Lake sediment
1308
1381
+
Gly
TCC
[ENA]
¢þ
>WENV181365457
OFPR01000510
[OFPR] sediment metagenome; Lake sediment
1319
1395
+
Gln
TTG
[ENA]
¢þ
>WENV181365462
OFPR01000695
[OFPR] sediment metagenome; Lake sediment
1325
1253
-
Gly
GCC
[ENA]
¢þ
>WENV181365431
OFPR01000012
[OFPR] sediment metagenome; Lake sediment
1352
1425
+
Gln
TTG
[ENA]
¢þ
>WENV181365453
OFPR01000199
[OFPR] sediment metagenome; Lake sediment
1381
1457
+
Asp
GTC
[ENA]
¢þ
>WENV181365469
OFPR01000762
[OFPR] sediment metagenome; Lake sediment
1386
1311
-
Pro
CGG
[ENA]
¢þ
>WENV181365458
OFPR01000556
[OFPR] sediment metagenome; Lake sediment
1429
1342
-
Ser
CGA
[ENA]
¢þ
>WENV181365461
OFPR01000695
[OFPR] sediment metagenome; Lake sediment
1456
1383
-
Thr
CGT
[ENA]
¢þ
>WENV181365468
OFPR01000762
[OFPR] sediment metagenome; Lake sediment
1586
1502
-
Leu
TAG
[ENA]
¢þ
>WENV181365424
OFPR01000002
[OFPR] sediment metagenome; Lake sediment
1714
1790
+
fMet
CAT
[ENA]
¢þ
>WENV181365440
OFPR01000090
[OFPR] sediment metagenome; Lake sediment
1828
1752
-
Arg
TCT
[ENA]
¢þ
>WENV181365439
OFPR01000090
[OFPR] sediment metagenome; Lake sediment
1969
1893
-
Pro
TGG
[ENA]
¢þ
>WENV181365432
OFPR01000012
[OFPR] sediment metagenome; Lake sediment
2143
2216
+
His
GTG
[ENA]
¢þ
>WENV181365442
OFPR01000136
[OFPR] sediment metagenome; Lake sediment
2150
2221
+
Ala
CGC
[ENA]
¢þ
>WENV181365433
OFPR01000012
[OFPR] sediment metagenome; Lake sediment
2230
2317
+
Leu
CAA
[ENA]
¢þ
>WENV181365443
OFPR01000136
[OFPR] sediment metagenome; Lake sediment
2255
2326
+
Gln
CTG
[ENA]
¢þ
>WENV181365438
OFPR01000089
[OFPR] sediment metagenome; Lake sediment
2362
2435
+
Ile2
CAT
[ENA]
¢þ
>WENV181365447
OFPR01000140
[OFPR] sediment metagenome; Lake sediment
2520
2595
+
Asn
GTT
[ENA]
¢þ
>WENV181365444
OFPR01000136
[OFPR] sediment metagenome; Lake sediment
2545
2618
+
Ala
GGC
[ENA]
¢þ
>WENV181365445
OFPR01000136
[OFPR] sediment metagenome; Lake sediment
2761
2834
+
Thr
TGT
[ENA]
¢þ
>WENV181365434
OFPR01000012
[OFPR] sediment metagenome; Lake sediment
4229
4301
+
Pro
GGG
[ENA]
¢þ
>WENV181365426
OFPR01000011
[OFPR] sediment metagenome; Lake sediment
4372
4297
-
Ala
TGC
[ENA]
¢þ
>WENV181365425
OFPR01000011
[OFPR] sediment metagenome; Lake sediment
4492
4416
-
Ile
GAT
[ENA]
¢þ
>WENV181365435
OFPR01000051
[OFPR] sediment metagenome; Lake sediment
4758
4686
-
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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