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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OFPX] freshwater metagenome; Freshwater Lake
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181367273
OFPX01001597
[OFPX] freshwater metagenome; Freshwater Lake
33
118
+
Leu
TAG
[ENA]
¢þ
>WENV181367269
OFPX01001027
[OFPX] freshwater metagenome; Freshwater Lake
110
38
-
Arg
CCG
[ENA]
¢þ
>WENV181367257
OFPX01000102
[OFPX] freshwater metagenome; Freshwater Lake
132
57
-
Ile2
CAT
[ENA]
¢þ
>WENV181367272
OFPX01001488
[OFPX] freshwater metagenome; Freshwater Lake
165
89
-
Asp
GTC
[ENA]
¢þ
>WENV181367261
OFPX01000393
[OFPX] freshwater metagenome; Freshwater Lake
167
96
-
Trp
CCA
[ENA]
¢þ
>WENV181367265
OFPX01000567
[OFPX] freshwater metagenome; Freshwater Lake
193
266
+
Gln
CTG
[ENA]
¢þ
>WENV181367266
OFPX01000621
[OFPX] freshwater metagenome; Freshwater Lake
229
156
-
Thr
CGT
[ENA]
¢þ
>WENV181367271
OFPX01001098
[OFPX] freshwater metagenome; Freshwater Lake
250
178
-
Cys
GCA
[ENA]
¢þ
>WENV181367268
OFPX01000943
[OFPX] freshwater metagenome; Freshwater Lake
256
177
-
Pro
GGG
[ENA]
¢þ
>WENV181367267
OFPX01000623
[OFPX] freshwater metagenome; Freshwater Lake
273
201
-
Arg
CCT
[ENA]
¢þ
>WENV181367263
OFPX01000505
[OFPX] freshwater metagenome; Freshwater Lake
296
222
-
Ala
TGC
[ENA]
¢þ
>WENV181367259
OFPX01000307
[OFPX] freshwater metagenome; Freshwater Lake
375
286
-
Ser
TGA
[ENA]
¢þ
>WENV181367270
OFPX01001098
[OFPX] freshwater metagenome; Freshwater Lake
378
304
-
Gly
GCC
[ENA]
¢þ
>WENV181367262
OFPX01000505
[OFPX] freshwater metagenome; Freshwater Lake
383
309
-
Ile
GAT
[ENA]
¢þ
>WENV181367260
OFPX01000370
[OFPX] freshwater metagenome; Freshwater Lake
407
323
-
Leu
CAG
[ENA]
¢þ
>WENV181367258
OFPX01000307
[OFPX] freshwater metagenome; Freshwater Lake
455
381
-
Asn
GTT
[ENA]
¢þ
>WENV181367264
OFPX01000538
[OFPX] freshwater metagenome; Freshwater Lake
547
474
-
Gly
TCC
[ENA]
¢þ
>WENV181367255
OFPX01000001
[OFPX] freshwater metagenome; Freshwater Lake
1053
977
-
Arg
TCT
[ENA]
¢þ
>WENV181367256
OFPX01000023
[OFPX] freshwater metagenome; Freshwater Lake
1098
1180
+
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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