This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFPZ] freshwater metagenome; Freshwater Lake
HIT:
52 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181367289
OFPZ01000390
[OFPZ] freshwater metagenome; Freshwater Lake
86
3
-
Tyr
GTA
[ENA]
¢þ
>WENV181367313
OFPZ01004324
[OFPZ] freshwater metagenome; Freshwater Lake
89
-1
-
Ser
GCT
[ENA]
¢þ
>WENV181367310
OFPZ01003727
[OFPZ] freshwater metagenome; Freshwater Lake
99
174
+
Thr
GGT
[ENA]
¢þ
>WENV181367316
OFPZ01004654
[OFPZ] freshwater metagenome; Freshwater Lake
132
216
+
Leu
CAA
[ENA]
¢þ
>WENV181367301
OFPZ01002580
[OFPZ] freshwater metagenome; Freshwater Lake
133
209
+
Ile
GAT
[ENA]
¢þ
>WENV181367331
OFPZ01007773
[OFPZ] freshwater metagenome; Freshwater Lake
136
207
+
His
GTG
[ENA]
¢þ
>WENV181367320
OFPZ01005147
[OFPZ] freshwater metagenome; Freshwater Lake
141
214
+
Lys
TTT
[ENA]
¢þ
>WENV181367285
OFPZ01000127
[OFPZ] freshwater metagenome; Freshwater Lake
152
79
-
Gln
CTG
[ENA]
¢þ
>WENV181367325
OFPZ01006638
[OFPZ] freshwater metagenome; Freshwater Lake
161
235
+
Asn
GTT
[ENA]
¢þ
>WENV181367291
OFPZ01000445
[OFPZ] freshwater metagenome; Freshwater Lake
168
94
-
Arg
TCT
[ENA]
¢þ
>WENV181367300
OFPZ01002518
[OFPZ] freshwater metagenome; Freshwater Lake
169
253
+
Leu
CAA
[ENA]
¢þ
>WENV181367288
OFPZ01000390
[OFPZ] freshwater metagenome; Freshwater Lake
194
120
-
Thr
TGT
[ENA]
¢þ
>WENV181367319
OFPZ01005003
[OFPZ] freshwater metagenome; Freshwater Lake
204
293
+
Ser
CGA
[ENA]
¢þ
>WENV181367323
OFPZ01006066
[OFPZ] freshwater metagenome; Freshwater Lake
210
286
+
Arg
CCG
[ENA]
¢þ
>WENV181367321
OFPZ01005172
[OFPZ] freshwater metagenome; Freshwater Lake
216
292
+
Val
CAC
[ENA]
¢þ
>WENV181367294
OFPZ01000958
[OFPZ] freshwater metagenome; Freshwater Lake
234
156
-
Pro
GGG
[ENA]
¢þ
>WENV181367329
OFPZ01007132
[OFPZ] freshwater metagenome; Freshwater Lake
259
187
-
Thr
GGT
[ENA]
¢þ
>WENV181367330
OFPZ01007210
[OFPZ] freshwater metagenome; Freshwater Lake
307
399
+
Ser
GCT
[ENA]
¢þ
>WENV181367317
OFPZ01004654
[OFPZ] freshwater metagenome; Freshwater Lake
313
401
+
Ser
TGA
[ENA]
¢þ
>WENV181367328
OFPZ01007132
[OFPZ] freshwater metagenome; Freshwater Lake
344
271
-
Gly
TCC
[ENA]
¢þ
>WENV181367326
OFPZ01006638
[OFPZ] freshwater metagenome; Freshwater Lake
357
431
+
Asn
GTT
[ENA]
¢þ
>WENV181367302
OFPZ01002680
[OFPZ] freshwater metagenome; Freshwater Lake
361
286
-
Pro
TGG
[ENA]
¢þ
>WENV181367307
OFPZ01003272
[OFPZ] freshwater metagenome; Freshwater Lake
376
463
+
Ser
CGA
[ENA]
¢þ
>WENV181367315
OFPZ01004437
[OFPZ] freshwater metagenome; Freshwater Lake
438
354
-
Leu
TAG
[ENA]
¢þ
>WENV181367327
OFPZ01007132
[OFPZ] freshwater metagenome; Freshwater Lake
471
387
-
Tyr
GTA
[ENA]
¢þ
>WENV181367322
OFPZ01005372
[OFPZ] freshwater metagenome; Freshwater Lake
480
407
-
Lys
TTT
[ENA]
¢þ
>WENV181367308
OFPZ01003272
[OFPZ] freshwater metagenome; Freshwater Lake
484
560
+
Arg
ACG
[ENA]
¢þ
>WENV181367304
OFPZ01003040
[OFPZ] freshwater metagenome; Freshwater Lake
491
581
+
Ser
GGA
[ENA]
¢þ
>WENV181367324
OFPZ01006504
[OFPZ] freshwater metagenome; Freshwater Lake
505
418
-
Leu
CAA
[ENA]
¢þ
>WENV181367311
OFPZ01003864
[OFPZ] freshwater metagenome; Freshwater Lake
511
440
-
Cys
GCA
[ENA]
¢þ
>WENV181367303
OFPZ01002826
[OFPZ] freshwater metagenome; Freshwater Lake
528
602
+
Gly
GCC
[ENA]
¢þ
>WENV181367314
OFPZ01004437
[OFPZ] freshwater metagenome; Freshwater Lake
538
462
-
Met
CAT
[ENA]
¢þ
>WENV181367306
OFPZ01003196
[OFPZ] freshwater metagenome; Freshwater Lake
546
618
+
Arg
CCT
[ENA]
¢þ
>WENV181367318
OFPZ01004654
[OFPZ] freshwater metagenome; Freshwater Lake
548
621
+
fMet
CAT
[ENA]
¢þ
>WENV181367281
OFPZ01000016
[OFPZ] freshwater metagenome; Freshwater Lake
560
484
-
Asp
GTC
[ENA]
¢þ
>WENV181367309
OFPZ01003272
[OFPZ] freshwater metagenome; Freshwater Lake
573
647
+
Glu
TTC
[ENA]
¢þ
>WENV181367296
OFPZ01001848
[OFPZ] freshwater metagenome; Freshwater Lake
584
659
+
Phe
GAA
[ENA]
¢þ
>WENV181367305
OFPZ01003099
[OFPZ] freshwater metagenome; Freshwater Lake
588
659
+
Ala
CGC
[ENA]
¢þ
>WENV181367312
OFPZ01004309
[OFPZ] freshwater metagenome; Freshwater Lake
608
535
-
Trp
CCA
[ENA]
¢þ
>WENV181367299
OFPZ01002042
[OFPZ] freshwater metagenome; Freshwater Lake
612
704
+
Ser
GCT
[ENA]
¢þ
>WENV181367297
OFPZ01001848
[OFPZ] freshwater metagenome; Freshwater Lake
666
739
+
Cys
GCA
[ENA]
¢þ
>WENV181367287
OFPZ01000290
[OFPZ] freshwater metagenome; Freshwater Lake
696
620
-
Ala
GGC
[ENA]
¢þ
>WENV181367298
OFPZ01001848
[OFPZ] freshwater metagenome; Freshwater Lake
746
822
+
Arg
CCT
[ENA]
¢þ
>WENV181367295
OFPZ01001152
[OFPZ] freshwater metagenome; Freshwater Lake
848
772
-
Ile
GAT
[ENA]
¢þ
>WENV181367284
OFPZ01000082
[OFPZ] freshwater metagenome; Freshwater Lake
883
811
-
Arg
CCT
[ENA]
¢þ
>WENV181367293
OFPZ01000802
[OFPZ] freshwater metagenome; Freshwater Lake
888
963
+
Val
TAC
[ENA]
¢þ
>WENV181367292
OFPZ01000551
[OFPZ] freshwater metagenome; Freshwater Lake
1044
970
-
Asp
GTC
[ENA]
¢þ
>WENV181367290
OFPZ01000408
[OFPZ] freshwater metagenome; Freshwater Lake
1295
1369
+
Glu
TTC
[ENA]
¢þ
>WENV181367282
OFPZ01000080
[OFPZ] freshwater metagenome; Freshwater Lake
1432
1506
+
Ile
GAT
[ENA]
¢þ
>WENV181367286
OFPZ01000218
[OFPZ] freshwater metagenome; Freshwater Lake
1477
1389
-
Ser
GGA
[ENA]
¢þ
>WENV181367283
OFPZ01000080
[OFPZ] freshwater metagenome; Freshwater Lake
1594
1671
+
Ala
TGC
[ENA]
¢þ
>WENV181367280
OFPZ01000016
[OFPZ] freshwater metagenome; Freshwater Lake
4083
4008
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK