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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OFQE] freshwater metagenome; Freshwater Lake
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181368005
OFQE01001449
[OFQE] freshwater metagenome; Freshwater Lake
73
159
+
Leu
CAG
[ENA]
¢þ
>WENV181367995
OFQE01000706
[OFQE] freshwater metagenome; Freshwater Lake
86
12
-
fMet
CAT
[ENA]
¢þ
>WENV181368007
OFQE01001471
[OFQE] freshwater metagenome; Freshwater Lake
87
1
-
Leu
TAA
[ENA]
¢þ
>WENV181367998
OFQE01001067
[OFQE] freshwater metagenome; Freshwater Lake
110
17
-
Ser
GCT
[ENA]
¢þ
>WENV181368016
OFQE01002524
[OFQE] freshwater metagenome; Freshwater Lake
137
210
+
Gly
TCC
[ENA]
¢þ
>WENV181367997
OFQE01000971
[OFQE] freshwater metagenome; Freshwater Lake
167
94
-
Glu
TTC
[ENA]
¢þ
>WENV181368015
OFQE01002471
[OFQE] freshwater metagenome; Freshwater Lake
182
107
-
Val
AAC
[ENA]
¢þ
>WENV181368012
OFQE01002076
[OFQE] freshwater metagenome; Freshwater Lake
196
268
+
Pro
TGG
[ENA]
¢þ
>WENV181368014
OFQE01002442
[OFQE] freshwater metagenome; Freshwater Lake
197
271
+
Gly
GCC
[ENA]
¢þ
>WENV181368006
OFQE01001449
[OFQE] freshwater metagenome; Freshwater Lake
199
283
+
Leu
CAG
[ENA]
¢þ
>WENV181368021
OFQE01003418
[OFQE] freshwater metagenome; Freshwater Lake
258
332
+
His
GTG
[ENA]
¢þ
>WENV181368020
OFQE01003057
[OFQE] freshwater metagenome; Freshwater Lake
262
338
+
fMet
CAT
[ENA]
¢þ
>WENV181368018
OFQE01002641
[OFQE] freshwater metagenome; Freshwater Lake
264
190
-
Glu
TTC
[ENA]
¢þ
>WENV181368001
OFQE01001354
[OFQE] freshwater metagenome; Freshwater Lake
273
348
+
Thr
TGT
[ENA]
¢þ
>WENV181367991
OFQE01000254
[OFQE] freshwater metagenome; Freshwater Lake
284
357
+
Gln
CTG
[ENA]
¢þ
>WENV181367986
OFQE01000103
[OFQE] freshwater metagenome; Freshwater Lake
286
215
-
Lys
TTT
[ENA]
¢þ
>WENV181368011
OFQE01002072
[OFQE] freshwater metagenome; Freshwater Lake
290
371
+
Leu
TAG
[ENA]
¢þ
>WENV181368009
OFQE01001720
[OFQE] freshwater metagenome; Freshwater Lake
297
222
-
Arg
ACG
[ENA]
¢þ
>WENV181368023
OFQE01003437
[OFQE] freshwater metagenome; Freshwater Lake
331
246
-
Tyr
GTA
[ENA]
¢þ
>WENV181367994
OFQE01000645
[OFQE] freshwater metagenome; Freshwater Lake
343
428
+
Leu
CAA
[ENA]
¢þ
>WENV181368002
OFQE01001354
[OFQE] freshwater metagenome; Freshwater Lake
350
424
+
Met
CAT
[ENA]
¢þ
>WENV181368010
OFQE01001829
[OFQE] freshwater metagenome; Freshwater Lake
359
435
+
Ala
GGC
[ENA]
¢þ
>WENV181368017
OFQE01002641
[OFQE] freshwater metagenome; Freshwater Lake
389
314
-
Ala
GGC
[ENA]
¢þ
>WENV181368024
OFQE01003816
[OFQE] freshwater metagenome; Freshwater Lake
406
331
-
Ala
CGC
[ENA]
¢þ
>WENV181368022
OFQE01003418
[OFQE] freshwater metagenome; Freshwater Lake
422
494
+
Cys
GCA
[ENA]
¢þ
>WENV181367999
OFQE01001251
[OFQE] freshwater metagenome; Freshwater Lake
425
498
+
Leu
TAA
[ENA]
¢þ
>WENV181368019
OFQE01002850
[OFQE] freshwater metagenome; Freshwater Lake
429
357
-
Arg
CCT
[ENA]
¢þ
>WENV181368003
OFQE01001354
[OFQE] freshwater metagenome; Freshwater Lake
437
523
+
Tyr
GTA
[ENA]
¢þ
>WENV181368013
OFQE01002124
[OFQE] freshwater metagenome; Freshwater Lake
469
544
+
Leu
TAG
[ENA]
¢þ
>WENV181368008
OFQE01001623
[OFQE] freshwater metagenome; Freshwater Lake
472
547
+
Ala
GGC
[ENA]
¢þ
>WENV181367996
OFQE01000776
[OFQE] freshwater metagenome; Freshwater Lake
494
566
+
Cys
GCA
[ENA]
¢þ
>WENV181368000
OFQE01001313
[OFQE] freshwater metagenome; Freshwater Lake
496
570
+
Arg
TCT
[ENA]
¢þ
>WENV181368004
OFQE01001354
[OFQE] freshwater metagenome; Freshwater Lake
528
602
+
Asn
GTT
[ENA]
¢þ
>WENV181367992
OFQE01000478
[OFQE] freshwater metagenome; Freshwater Lake
569
643
+
Ile
GAT
[ENA]
¢þ
>WENV181367987
OFQE01000133
[OFQE] freshwater metagenome; Freshwater Lake
592
666
+
Met
CAT
[ENA]
¢þ
>WENV181367993
OFQE01000478
[OFQE] freshwater metagenome; Freshwater Lake
660
732
+
Ala
TGC
[ENA]
¢þ
>WENV181367988
OFQE01000133
[OFQE] freshwater metagenome; Freshwater Lake
677
761
+
Tyr
GTA
[ENA]
¢þ
>WENV181367990
OFQE01000230
[OFQE] freshwater metagenome; Freshwater Lake
829
757
-
Lys
TTT
[ENA]
¢þ
>WENV181367989
OFQE01000133
[OFQE] freshwater metagenome; Freshwater Lake
901
974
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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