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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFRK] marine metagenome; sea ice
HIT:
101 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181385829
OFRK01013221
[OFRK] marine metagenome; sea ice
9
82
+
Gly
TCC
[ENA]
¢þ
>WENV181385824
OFRK01011845
[OFRK] marine metagenome; sea ice
13
99
+
Leu
CAG
[ENA]
¢þ
>WENV181385792
OFRK01004520
[OFRK] marine metagenome; sea ice
52
139
+
Ser
TGA
[ENA]
¢þ
>WENV181385767
OFRK01001623
[OFRK] marine metagenome; sea ice
64
138
+
Asn
GTT
[ENA]
¢þ
>WENV181385795
OFRK01005362
[OFRK] marine metagenome; sea ice
80
155
+
Thr
CGT
[ENA]
¢þ
>WENV181385825
OFRK01011869
[OFRK] marine metagenome; sea ice
83
159
+
Val
GAC
[ENA]
¢þ
>WENV181385754
OFRK01000631
[OFRK] marine metagenome; sea ice
86
161
+
Ala
TGC
[ENA]
¢þ
>WENV181385816
OFRK01010710
[OFRK] marine metagenome; sea ice
86
161
+
Ala
GGC
[ENA]
¢þ
>WENV181385810
OFRK01009276
[OFRK] marine metagenome; sea ice
90
164
+
Arg
ACG
[ENA]
¢þ
>WENV181385827
OFRK01012523
[OFRK] marine metagenome; sea ice
94
10
-
Leu
CAA
[ENA]
¢þ
>WENV181385842
OFRK01020870
[OFRK] marine metagenome; sea ice
112
197
+
Leu
TAA
[ENA]
¢þ
>WENV181385834
OFRK01015049
[OFRK] marine metagenome; sea ice
120
193
+
Arg
ACG
[ENA]
¢þ
>WENV181385817
OFRK01010789
[OFRK] marine metagenome; sea ice
126
201
+
Thr
CGT
[ENA]
¢þ
>WENV181385843
OFRK01021500
[OFRK] marine metagenome; sea ice
133
57
-
Ile
GAT
[ENA]
¢þ
>WENV181385819
OFRK01011471
[OFRK] marine metagenome; sea ice
145
228
+
Leu
TAG
[ENA]
¢þ
>WENV181385788
OFRK01003666
[OFRK] marine metagenome; sea ice
152
77
-
Gln
TTG
[ENA]
¢þ
>WENV181385801
OFRK01006893
[OFRK] marine metagenome; sea ice
154
227
+
Trp
CCA
[ENA]
¢þ
>WENV181385749
OFRK01000152
[OFRK] marine metagenome; sea ice
159
235
+
fMet
CAT
[ENA]
¢þ
>WENV181385779
OFRK01002710
[OFRK] marine metagenome; sea ice
162
251
+
Ser
GCT
[ENA]
¢þ
>WENV181385778
OFRK01002697
[OFRK] marine metagenome; sea ice
167
80
-
Ser
TGA
[ENA]
¢þ
>WENV181385755
OFRK01000633
[OFRK] marine metagenome; sea ice
174
100
-
Asn
GTT
[ENA]
¢þ
>WENV181385839
OFRK01020107
[OFRK] marine metagenome; sea ice
174
246
+
Gly
GCC
[ENA]
¢þ
>WENV181385836
OFRK01017195
[OFRK] marine metagenome; sea ice
177
101
-
fMet
CAT
[ENA]
¢þ
>WENV181385806
OFRK01008757
[OFRK] marine metagenome; sea ice
180
254
+
Val
CAC
[ENA]
¢þ
>WENV181385833
OFRK01014976
[OFRK] marine metagenome; sea ice
198
125
-
Lys
TTT
[ENA]
¢þ
>WENV181385760
OFRK01000934
[OFRK] marine metagenome; sea ice
201
128
-
Arg
CCT
[ENA]
¢þ
>WENV181385769
OFRK01001862
[OFRK] marine metagenome; sea ice
213
140
-
Ile
GAT
[ENA]
¢þ
>WENV181385818
OFRK01011321
[OFRK] marine metagenome; sea ice
216
142
-
Gly
TCC
[ENA]
¢þ
>WENV181385753
OFRK01000504
[OFRK] marine metagenome; sea ice
227
152
-
Thr
TGT
[ENA]
¢þ
>WENV181385828
OFRK01013016
[OFRK] marine metagenome; sea ice
251
342
+
Ser
TGA
[ENA]
¢þ
>WENV181385763
OFRK01001459
[OFRK] marine metagenome; sea ice
253
178
-
Trp
CCA
[ENA]
¢þ
>WENV181385776
OFRK01002466
[OFRK] marine metagenome; sea ice
257
331
+
Thr
GGT
[ENA]
¢þ
>WENV181385751
OFRK01000203
[OFRK] marine metagenome; sea ice
265
184
-
Ser
GCT
[ENA]
¢þ
>WENV181385835
OFRK01016333
[OFRK] marine metagenome; sea ice
269
344
+
Phe
GAA
[ENA]
¢þ
>WENV181385840
OFRK01020107
[OFRK] marine metagenome; sea ice
271
344
+
Cys
GCA
[ENA]
¢þ
>WENV181385815
OFRK01010589
[OFRK] marine metagenome; sea ice
273
198
-
Phe
GAA
[ENA]
¢þ
>WENV181385823
OFRK01011814
[OFRK] marine metagenome; sea ice
273
346
+
Cys
GCA
[ENA]
¢þ
>WENV181385785
OFRK01003519
[OFRK] marine metagenome; sea ice
277
358
+
Leu
TAG
[ENA]
¢þ
>WENV181385777
OFRK01002505
[OFRK] marine metagenome; sea ice
292
219
-
Trp
CCA
[ENA]
¢þ
>WENV181385845
OFRK01022646
[OFRK] marine metagenome; sea ice
309
235
-
Glu
TTC
[ENA]
¢þ
>WENV181385837
OFRK01018756
[OFRK] marine metagenome; sea ice
309
395
+
Leu
CAA
[ENA]
¢þ
>WENV181385838
OFRK01019438
[OFRK] marine metagenome; sea ice
327
401
+
Thr
GGT
[ENA]
¢þ
>WENV181385786
OFRK01003522
[OFRK] marine metagenome; sea ice
330
405
+
Ile
GAT
[ENA]
¢þ
>WENV181385832
OFRK01014259
[OFRK] marine metagenome; sea ice
344
416
+
Arg
CCT
[ENA]
¢þ
>WENV181385800
OFRK01006559
[OFRK] marine metagenome; sea ice
345
271
-
Asp
GTC
[ENA]
¢þ
>WENV181385762
OFRK01001327
[OFRK] marine metagenome; sea ice
347
420
+
Glu
CTC
[ENA]
¢þ
>WENV181385814
OFRK01010589
[OFRK] marine metagenome; sea ice
352
278
-
Cys
GCA
[ENA]
¢þ
>WENV181385774
OFRK01002416
[OFRK] marine metagenome; sea ice
353
424
+
Thr
AGT
[ENA]
¢þ
>WENV181385822
OFRK01011606
[OFRK] marine metagenome; sea ice
353
429
+
Met
CAT
[ENA]
¢þ
>WENV181385841
OFRK01020107
[OFRK] marine metagenome; sea ice
355
430
+
Val
GAC
[ENA]
¢þ
>WENV181385809
OFRK01008961
[OFRK] marine metagenome; sea ice
355
442
+
Ser
GGA
[ENA]
¢þ
>WENV181385811
OFRK01009276
[OFRK] marine metagenome; sea ice
356
437
+
Leu
CAA
[ENA]
¢þ
>WENV181385798
OFRK01006366
[OFRK] marine metagenome; sea ice
357
281
-
fMet
CAT
[ENA]
¢þ
>WENV181385820
OFRK01011471
[OFRK] marine metagenome; sea ice
370
443
+
Thr
CGT
[ENA]
¢þ
>WENV181385780
OFRK01003458
[OFRK] marine metagenome; sea ice
373
445
+
Arg
TCG
[ENA]
¢þ
>WENV181385812
OFRK01010046
[OFRK] marine metagenome; sea ice
386
310
-
Ile
AAT
[ENA]
¢þ
>WENV181385844
OFRK01021604
[OFRK] marine metagenome; sea ice
396
320
-
Met
CAT
[ENA]
¢þ
>WENV181385808
OFRK01008864
[OFRK] marine metagenome; sea ice
407
332
-
Trp
CCA
[ENA]
¢þ
>WENV181385783
OFRK01003491
[OFRK] marine metagenome; sea ice
411
486
+
Gly
GCC
[ENA]
¢þ
>WENV181385757
OFRK01000749
[OFRK] marine metagenome; sea ice
417
491
+
Gln
TTG
[ENA]
¢þ
>WENV181385802
OFRK01007527
[OFRK] marine metagenome; sea ice
425
514
+
Ser
TGA
[ENA]
¢þ
>WENV181385831
OFRK01013941
[OFRK] marine metagenome; sea ice
438
362
-
Pro
CGG
[ENA]
¢þ
>WENV181385799
OFRK01006559
[OFRK] marine metagenome; sea ice
444
369
-
Glu
TTC
[ENA]
¢þ
>WENV181385830
OFRK01013612
[OFRK] marine metagenome; sea ice
450
380
-
Gly
GCC
[ENA]
¢þ
>WENV181385758
OFRK01000811
[OFRK] marine metagenome; sea ice
472
548
+
Ile
GAT
[ENA]
¢þ
>WENV181385781
OFRK01003466
[OFRK] marine metagenome; sea ice
489
566
+
Arg
TCT
[ENA]
¢þ
>WENV181385826
OFRK01012405
[OFRK] marine metagenome; sea ice
494
420
-
Asp
GTC
[ENA]
¢þ
>WENV181385813
OFRK01010589
[OFRK] marine metagenome; sea ice
508
431
-
Leu
TAA
[ENA]
¢þ
>WENV181385764
OFRK01001600
[OFRK] marine metagenome; sea ice
533
607
+
Gln
TTG
[ENA]
¢þ
>WENV181385791
OFRK01004440
[OFRK] marine metagenome; sea ice
547
471
-
Asp
GTC
[ENA]
¢þ
>WENV181385790
OFRK01004161
[OFRK] marine metagenome; sea ice
547
474
-
Gly
GCC
[ENA]
¢þ
>WENV181385821
OFRK01011471
[OFRK] marine metagenome; sea ice
553
482
-
Cys
GCA
[ENA]
¢þ
>WENV181385773
OFRK01002267
[OFRK] marine metagenome; sea ice
557
485
-
fMet
CAT
[ENA]
¢þ
>WENV181385784
OFRK01003491
[OFRK] marine metagenome; sea ice
561
634
+
Cys
GCA
[ENA]
¢þ
>WENV181385804
OFRK01008391
[OFRK] marine metagenome; sea ice
564
491
-
Gln
TTG
[ENA]
¢þ
>WENV181385775
OFRK01002418
[OFRK] marine metagenome; sea ice
564
640
+
Arg
CCG
[ENA]
¢þ
>WENV181385803
OFRK01008383
[OFRK] marine metagenome; sea ice
565
493
-
Met
CAT
[ENA]
¢þ
>WENV181385782
OFRK01003466
[OFRK] marine metagenome; sea ice
573
650
+
Met
CAT
[ENA]
¢þ
>WENV181385759
OFRK01000811
[OFRK] marine metagenome; sea ice
574
649
+
Ala
TGC
[ENA]
¢þ
>WENV181385794
OFRK01005181
[OFRK] marine metagenome; sea ice
586
667
+
Tyr
GTA
[ENA]
¢þ
>WENV181385796
OFRK01005605
[OFRK] marine metagenome; sea ice
587
660
+
Phe
GAA
[ENA]
¢þ
>WENV181385807
OFRK01008757
[OFRK] marine metagenome; sea ice
602
523
-
Ser
CGA
[ENA]
¢þ
>WENV181385787
OFRK01003522
[OFRK] marine metagenome; sea ice
635
708
+
Ala
TGC
[ENA]
¢þ
>WENV181385805
OFRK01008647
[OFRK] marine metagenome; sea ice
636
560
-
Ala
TGC
[ENA]
¢þ
>WENV181385797
OFRK01006366
[OFRK] marine metagenome; sea ice
648
563
-
Leu
GAG
[ENA]
¢þ
>WENV181385768
OFRK01001624
[OFRK] marine metagenome; sea ice
661
736
+
His
GTG
[ENA]
¢þ
>WENV181385765
OFRK01001600
[OFRK] marine metagenome; sea ice
678
752
+
Tyr
GTA
[ENA]
¢þ
>WENV181385793
OFRK01004844
[OFRK] marine metagenome; sea ice
713
640
-
Ala
TGC
[ENA]
¢þ
>WENV181385771
OFRK01001909
[OFRK] marine metagenome; sea ice
737
654
-
Leu
GAG
[ENA]
¢þ
>WENV181385789
OFRK01004053
[OFRK] marine metagenome; sea ice
747
673
-
Val
GAC
[ENA]
¢þ
>WENV181385766
OFRK01001600
[OFRK] marine metagenome; sea ice
755
830
+
Asn
GTT
[ENA]
¢þ
>WENV181385761
OFRK01001165
[OFRK] marine metagenome; sea ice
839
915
+
Val
GAC
[ENA]
¢þ
>WENV181385770
OFRK01001896
[OFRK] marine metagenome; sea ice
865
939
+
Ile
GAT
[ENA]
¢þ
>WENV181385772
OFRK01001952
[OFRK] marine metagenome; sea ice
891
800
-
Ser
GCT
[ENA]
¢þ
>WENV181385752
OFRK01000382
[OFRK] marine metagenome; sea ice
1056
1130
+
Arg
CCT
[ENA]
¢þ
>WENV181385756
OFRK01000667
[OFRK] marine metagenome; sea ice
1140
1065
-
Asn
GTT
[ENA]
¢þ
>WENV181385750
OFRK01000157
[OFRK] marine metagenome; sea ice
1432
1359
-
Gly
TCC
[ENA]
¢þ
>WENV181385747
OFRK01000077
[OFRK] marine metagenome; sea ice
1818
1891
+
Ile
GAT
[ENA]
¢þ
>WENV181385748
OFRK01000077
[OFRK] marine metagenome; sea ice
1894
1967
+
Ala
TGC
[ENA]
¢þ
>WENV181385745
OFRK01000024
[OFRK] marine metagenome; sea ice
1910
1985
+
Ala
TGC
[ENA]
¢þ
>WENV181385746
OFRK01000024
[OFRK] marine metagenome; sea ice
2009
2085
+
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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