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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OFRR] freshwater metagenome; Freshwater Lake
HIT:
22 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181391237
OFRR01000295
[OFRR] freshwater metagenome; Freshwater Lake
171
245
+
Thr
GGT
[ENA]
¢þ
>WENV181391241
OFRR01000485
[OFRR] freshwater metagenome; Freshwater Lake
337
424
+
Ser
GGA
[ENA]
¢þ
>WENV181391239
OFRR01000341
[OFRR] freshwater metagenome; Freshwater Lake
347
276
-
Arg
CCT
[ENA]
¢þ
>WENV181391242
OFRR01000485
[OFRR] freshwater metagenome; Freshwater Lake
437
510
+
fMet
CAT
[ENA]
¢þ
>WENV181391243
OFRR01000485
[OFRR] freshwater metagenome; Freshwater Lake
516
590
+
Phe
GAA
[ENA]
¢þ
>WENV181391234
OFRR01000143
[OFRR] freshwater metagenome; Freshwater Lake
545
627
+
Leu
CAG
[ENA]
¢þ
>WENV181391244
OFRR01000485
[OFRR] freshwater metagenome; Freshwater Lake
609
689
+
Tyr
GTA
[ENA]
¢þ
>WENV181391245
OFRR01000485
[OFRR] freshwater metagenome; Freshwater Lake
730
803
+
Gln
TTG
[ENA]
¢þ
>WENV181391235
OFRR01000143
[OFRR] freshwater metagenome; Freshwater Lake
753
841
+
Ser
CGA
[ENA]
¢þ
>WENV181391240
OFRR01000411
[OFRR] freshwater metagenome; Freshwater Lake
1061
1136
+
Thr
CGT
[ENA]
¢þ
>WENV181391238
OFRR01000332
[OFRR] freshwater metagenome; Freshwater Lake
1830
1759
-
Arg
CCG
[ENA]
¢þ
>WENV181391236
OFRR01000169
[OFRR] freshwater metagenome; Freshwater Lake
2498
2573
+
Lys
CTT
[ENA]
¢þ
>WENV181391224
OFRR01000003
[OFRR] freshwater metagenome; Freshwater Lake
3477
3551
+
Ala
TGC
[ENA]
¢þ
>WENV181391225
OFRR01000003
[OFRR] freshwater metagenome; Freshwater Lake
7106
7180
+
Val
TAC
[ENA]
¢þ
>WENV181391226
OFRR01000003
[OFRR] freshwater metagenome; Freshwater Lake
7205
7277
+
Asp
GTC
[ENA]
¢þ
>WENV181391227
OFRR01000003
[OFRR] freshwater metagenome; Freshwater Lake
7305
7377
+
Lys
TTT
[ENA]
¢þ
>WENV181391228
OFRR01000003
[OFRR] freshwater metagenome; Freshwater Lake
7387
7468
+
Leu
TAG
[ENA]
¢þ
>WENV181391229
OFRR01000003
[OFRR] freshwater metagenome; Freshwater Lake
7479
7551
+
Thr
TGT
[ENA]
¢þ
>WENV181391230
OFRR01000003
[OFRR] freshwater metagenome; Freshwater Lake
7571
7642
+
Gly
GCC
[ENA]
¢þ
>WENV181391231
OFRR01000003
[OFRR] freshwater metagenome; Freshwater Lake
7650
7735
+
Leu
TAA
[ENA]
¢þ
>WENV181391232
OFRR01000003
[OFRR] freshwater metagenome; Freshwater Lake
7745
7818
+
Arg
ACG
[ENA]
¢þ
>WENV181391233
OFRR01000003
[OFRR] freshwater metagenome; Freshwater Lake
7860
7933
+
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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