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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OFRS] freshwater metagenome; Freshwater Lake
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181391283
OFRS01002321
[OFRS] freshwater metagenome; Freshwater Lake
39
115
+
Ile
GAT
[ENA]
¢þ
>WENV181391280
OFRS01002211
[OFRS] freshwater metagenome; Freshwater Lake
47
132
+
Leu
CAA
[ENA]
¢þ
>WENV181391263
OFRS01000743
[OFRS] freshwater metagenome; Freshwater Lake
93
168
+
Arg
CCG
[ENA]
¢þ
>WENV181391252
OFRS01000134
[OFRS] freshwater metagenome; Freshwater Lake
127
211
+
Tyr
GTA
[ENA]
¢þ
>WENV181391284
OFRS01002321
[OFRS] freshwater metagenome; Freshwater Lake
133
208
+
Ala
GGC
[ENA]
¢þ
>WENV181391278
OFRS01002014
[OFRS] freshwater metagenome; Freshwater Lake
147
221
+
Thr
TGT
[ENA]
¢þ
>WENV181391256
OFRS01000390
[OFRS] freshwater metagenome; Freshwater Lake
148
55
-
Ser
GCT
[ENA]
¢þ
>WENV181391273
OFRS01001766
[OFRS] freshwater metagenome; Freshwater Lake
150
74
-
fMet
CAT
[ENA]
¢þ
>WENV181391268
OFRS01000966
[OFRS] freshwater metagenome; Freshwater Lake
158
66
-
Ser
GCT
[ENA]
¢þ
>WENV181391271
OFRS01001321
[OFRS] freshwater metagenome; Freshwater Lake
182
107
-
His
GTG
[ENA]
¢þ
>WENV181391249
OFRS01000047
[OFRS] freshwater metagenome; Freshwater Lake
185
112
-
Gly
TCC
[ENA]
¢þ
>WENV181391267
OFRS01000952
[OFRS] freshwater metagenome; Freshwater Lake
224
300
+
His
GTG
[ENA]
¢þ
>WENV181391258
OFRS01000517
[OFRS] freshwater metagenome; Freshwater Lake
225
298
+
Thr
GGT
[ENA]
¢þ
>WENV181391285
OFRS01002321
[OFRS] freshwater metagenome; Freshwater Lake
246
321
+
Glu
TTC
[ENA]
¢þ
>WENV181391270
OFRS01001273
[OFRS] freshwater metagenome; Freshwater Lake
251
175
-
Asp
GTC
[ENA]
¢þ
>WENV181391287
OFRS01002490
[OFRS] freshwater metagenome; Freshwater Lake
270
344
+
Arg
CCT
[ENA]
¢þ
>WENV181391253
OFRS01000134
[OFRS] freshwater metagenome; Freshwater Lake
277
350
+
Gly
TCC
[ENA]
¢þ
>WENV181391281
OFRS01002256
[OFRS] freshwater metagenome; Freshwater Lake
291
215
-
fMet
CAT
[ENA]
¢þ
>WENV181391275
OFRS01001819
[OFRS] freshwater metagenome; Freshwater Lake
309
393
+
Leu
CAA
[ENA]
¢þ
>WENV181391288
OFRS01002591
[OFRS] freshwater metagenome; Freshwater Lake
316
390
+
Trp
CCA
[ENA]
¢þ
>WENV181391282
OFRS01002291
[OFRS] freshwater metagenome; Freshwater Lake
320
394
+
Val
GAC
[ENA]
¢þ
>WENV181391248
OFRS01000047
[OFRS] freshwater metagenome; Freshwater Lake
330
245
-
Tyr
GTA
[ENA]
¢þ
>WENV181391259
OFRS01000517
[OFRS] freshwater metagenome; Freshwater Lake
334
408
+
Met
CAT
[ENA]
¢þ
>WENV181391289
OFRS01002637
[OFRS] freshwater metagenome; Freshwater Lake
360
287
-
Arg
CCT
[ENA]
¢þ
>WENV181391272
OFRS01001722
[OFRS] freshwater metagenome; Freshwater Lake
366
291
-
Trp
CCA
[ENA]
¢þ
>WENV181391286
OFRS01002321
[OFRS] freshwater metagenome; Freshwater Lake
371
447
+
Asp
GTC
[ENA]
¢þ
>WENV181391274
OFRS01001794
[OFRS] freshwater metagenome; Freshwater Lake
411
484
+
Gly
CCC
[ENA]
¢þ
>WENV181391276
OFRS01001982
[OFRS] freshwater metagenome; Freshwater Lake
423
348
-
Arg
ACG
[ENA]
¢þ
>WENV181391279
OFRS01002064
[OFRS] freshwater metagenome; Freshwater Lake
427
512
+
Ser
TGA
[ENA]
¢þ
>WENV181391261
OFRS01000663
[OFRS] freshwater metagenome; Freshwater Lake
480
570
+
Ser
GGA
[ENA]
¢þ
>WENV181391269
OFRS01001273
[OFRS] freshwater metagenome; Freshwater Lake
486
411
-
Val
TAC
[ENA]
¢þ
>WENV181391277
OFRS01001993
[OFRS] freshwater metagenome; Freshwater Lake
511
436
-
Val
TAC
[ENA]
¢þ
>WENV181391266
OFRS01000896
[OFRS] freshwater metagenome; Freshwater Lake
531
458
-
Ala
TGC
[ENA]
¢þ
>WENV181391260
OFRS01000560
[OFRS] freshwater metagenome; Freshwater Lake
579
655
+
Pro
GGG
[ENA]
¢þ
>WENV181391264
OFRS01000819
[OFRS] freshwater metagenome; Freshwater Lake
591
666
+
Asn
GTT
[ENA]
¢þ
>WENV181391265
OFRS01000896
[OFRS] freshwater metagenome; Freshwater Lake
622
544
-
Ile
GAT
[ENA]
¢þ
>WENV181391262
OFRS01000731
[OFRS] freshwater metagenome; Freshwater Lake
736
660
-
Ile2
CAT
[ENA]
¢þ
>WENV181391251
OFRS01000096
[OFRS] freshwater metagenome; Freshwater Lake
781
705
-
Arg
TCT
[ENA]
¢þ
>WENV181391257
OFRS01000456
[OFRS] freshwater metagenome; Freshwater Lake
860
789
-
His
GTG
[ENA]
¢þ
>WENV181391250
OFRS01000096
[OFRS] freshwater metagenome; Freshwater Lake
906
830
-
Pro
TGG
[ENA]
¢þ
>WENV181391255
OFRS01000271
[OFRS] freshwater metagenome; Freshwater Lake
1102
1186
+
Leu
CAG
[ENA]
¢þ
>WENV181391254
OFRS01000259
[OFRS] freshwater metagenome; Freshwater Lake
1225
1149
-
Arg
ACG
[ENA]
¢þ
>WENV181391247
OFRS01000001
[OFRS] freshwater metagenome; Freshwater Lake
3831
3756
-
Ala
TGC
[ENA]
¢þ
>WENV181391246
OFRS01000001
[OFRS] freshwater metagenome; Freshwater Lake
3954
3878
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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