This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OGCR] metagenome; Human gut stool
HIT:
60 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181427587
OGCR01000194
[OGCR] metagenome; Human gut stool
58
132
+
Gly
TCC
[ENA]
¢þ
>WENV181427573
OGCR01000062
[OGCR] metagenome; Human gut stool
90
164
+
Asp
GTC
[ENA]
¢þ
>WENV181427590
OGCR01000319
[OGCR] metagenome; Human gut stool
107
32
-
Arg
TCT
[ENA]
¢þ
>WENV181427593
OGCR01000699
[OGCR] metagenome; Human gut stool
125
200
+
Lys
TTT
[ENA]
¢þ
>WENV181427588
OGCR01000194
[OGCR] metagenome; Human gut stool
138
213
+
Thr
GGT
[ENA]
¢þ
>WENV181427594
OGCR01000734
[OGCR] metagenome; Human gut stool
139
64
-
Trp
CCA
[ENA]
¢þ
>WENV181427591
OGCR01000537
[OGCR] metagenome; Human gut stool
151
225
+
Ile
GAT
[ENA]
¢þ
>WENV181427574
OGCR01000062
[OGCR] metagenome; Human gut stool
202
276
+
Asp
GTC
[ENA]
¢þ
>WENV181427592
OGCR01000537
[OGCR] metagenome; Human gut stool
242
316
+
Ala
TGC
[ENA]
¢þ
>WENV181427586
OGCR01000174
[OGCR] metagenome; Human gut stool
249
334
+
Leu
TAA
[ENA]
¢þ
>WENV181427589
OGCR01000319
[OGCR] metagenome; Human gut stool
301
225
-
Pro
TGG
[ENA]
¢þ
>WENV181427595
OGCR01000895
[OGCR] metagenome; Human gut stool
532
457
-
Lys
TTT
[ENA]
¢þ
>WENV181427583
OGCR01000069
[OGCR] metagenome; Human gut stool
1247
1174
-
His
GTG
[ENA]
¢þ
>WENV181427582
OGCR01000069
[OGCR] metagenome; Human gut stool
1324
1253
-
Arg
TCG
[ENA]
¢þ
>WENV181427581
OGCR01000069
[OGCR] metagenome; Human gut stool
1408
1337
-
Gln
TTG
[ENA]
¢þ
>WENV181427580
OGCR01000069
[OGCR] metagenome; Human gut stool
1497
1415
-
Tyr
GTA
[ENA]
¢þ
>WENV181427579
OGCR01000069
[OGCR] metagenome; Human gut stool
1579
1506
-
Phe
GAA
[ENA]
¢þ
>WENV181427578
OGCR01000069
[OGCR] metagenome; Human gut stool
1659
1588
-
Gln
CTG
[ENA]
¢þ
>WENV181427577
OGCR01000069
[OGCR] metagenome; Human gut stool
1751
1665
-
Ser
TGA
[ENA]
¢þ
>WENV181427576
OGCR01000069
[OGCR] metagenome; Human gut stool
1833
1758
-
Arg
ACG
[ENA]
¢þ
>WENV181427575
OGCR01000069
[OGCR] metagenome; Human gut stool
1924
1839
-
Ser
GCT
[ENA]
¢þ
>WENV181427585
OGCR01000119
[OGCR] metagenome; Human gut stool
2198
2123
-
Glu
TTC
[ENA]
¢þ
>WENV181427549
OGCR01000014
[OGCR] metagenome; Human gut stool
4164
4076
-
Ser
GGA
[ENA]
¢þ
>WENV181427572
OGCR01000060
[OGCR] metagenome; Human gut stool
5974
5899
-
Arg
TCT
[ENA]
¢þ
>WENV181427584
OGCR01000086
[OGCR] metagenome; Human gut stool
6925
6999
+
Asp
GTC
[ENA]
¢þ
>WENV181427566
OGCR01000049
[OGCR] metagenome; Human gut stool
8509
8591
+
Leu
CAG
[ENA]
¢þ
>WENV181427567
OGCR01000049
[OGCR] metagenome; Human gut stool
8615
8699
+
Leu
GAG
[ENA]
¢þ
>WENV181427558
OGCR01000033
[OGCR] metagenome; Human gut stool
9600
9687
+
Ser
GCT
[ENA]
¢þ
>WENV181427559
OGCR01000033
[OGCR] metagenome; Human gut stool
9714
9786
+
Glu
CTC
[ENA]
¢þ
>WENV181427560
OGCR01000033
[OGCR] metagenome; Human gut stool
9855
9927
+
Glu
CTC
[ENA]
¢þ
>WENV181427565
OGCR01000041
[OGCR] metagenome; Human gut stool
10527
10456
-
Gly
CCC
[ENA]
¢þ
>WENV181427564
OGCR01000041
[OGCR] metagenome; Human gut stool
10632
10559
-
Thr
CGT
[ENA]
¢þ
>WENV181427563
OGCR01000040
[OGCR] metagenome; Human gut stool
14238
14167
-
Gln
CTG
[ENA]
¢þ
>WENV181427553
OGCR01000024
[OGCR] metagenome; Human gut stool
19110
19181
+
Cys
GCA
[ENA]
¢þ
>WENV181427569
OGCR01000054
[OGCR] metagenome; Human gut stool
23811
23886
+
Val
TAC
[ENA]
¢þ
>WENV181427570
OGCR01000054
[OGCR] metagenome; Human gut stool
23936
24011
+
Val
TAC
[ENA]
¢þ
>WENV181427571
OGCR01000058
[OGCR] metagenome; Human gut stool
24813
24740
-
fMet
CAT
[ENA]
¢þ
>WENV181427544
OGCR01000004
[OGCR] metagenome; Human gut stool
25835
25761
-
Ile2
CAT
[ENA]
¢þ
>WENV181427568
OGCR01000053
[OGCR] metagenome; Human gut stool
29733
29806
+
Lys
CTT
[ENA]
¢þ
>WENV181427561
OGCR01000034
[OGCR] metagenome; Human gut stool
32029
31947
-
Tyr
GTA
[ENA]
¢þ
>WENV181427556
OGCR01000026
[OGCR] metagenome; Human gut stool
36453
36379
-
Thr
TGT
[ENA]
¢þ
>WENV181427555
OGCR01000026
[OGCR] metagenome; Human gut stool
42047
41962
-
Ser
TGA
[ENA]
¢þ
>WENV181427562
OGCR01000038
[OGCR] metagenome; Human gut stool
42655
42572
-
Leu
TAG
[ENA]
¢þ
>WENV181427557
OGCR01000028
[OGCR] metagenome; Human gut stool
45588
45675
+
Leu
TAA
[ENA]
¢þ
>WENV181427554
OGCR01000026
[OGCR] metagenome; Human gut stool
45685
45612
-
Phe
GAA
[ENA]
¢þ
>WENV181427543
OGCR01000004
[OGCR] metagenome; Human gut stool
47315
47241
-
Asn
GTT
[ENA]
¢þ
>WENV181427552
OGCR01000019
[OGCR] metagenome; Human gut stool
47622
47548
-
Pro
TGG
[ENA]
¢þ
>WENV181427551
OGCR01000019
[OGCR] metagenome; Human gut stool
47735
47661
-
Pro
TGG
[ENA]
¢þ
>WENV181427545
OGCR01000005
[OGCR] metagenome; Human gut stool
49725
49651
-
Met
CAT
[ENA]
¢þ
>WENV181427550
OGCR01000018
[OGCR] metagenome; Human gut stool
59866
59939
+
Lys
TTT
[ENA]
¢þ
>WENV181427548
OGCR01000010
[OGCR] metagenome; Human gut stool
65646
65571
-
His
GTG
[ENA]
¢þ
>WENV181427546
OGCR01000006
[OGCR] metagenome; Human gut stool
66459
66530
+
Gln
TTG
[ENA]
¢þ
>WENV181427542
OGCR01000004
[OGCR] metagenome; Human gut stool
72059
71975
-
Leu
CAA
[ENA]
¢þ
>WENV181427547
OGCR01000006
[OGCR] metagenome; Human gut stool
78888
78816
-
Arg
CCT
[ENA]
¢þ
>WENV181427539
OGCR01000002
[OGCR] metagenome; Human gut stool
82196
82123
-
Trp
CCA
[ENA]
¢þ
>WENV181427538
OGCR01000002
[OGCR] metagenome; Human gut stool
83596
83524
-
Thr
GGT
[ENA]
¢þ
>WENV181427537
OGCR01000002
[OGCR] metagenome; Human gut stool
83778
83696
-
Tyr
GTA
[ENA]
¢þ
>WENV181427536
OGCR01000002
[OGCR] metagenome; Human gut stool
83870
83796
-
Thr
TGT
[ENA]
¢þ
>WENV181427541
OGCR01000003
[OGCR] metagenome; Human gut stool
94583
94510
-
Phe
GAA
[ENA]
¢þ
>WENV181427540
OGCR01000003
[OGCR] metagenome; Human gut stool
94739
94814
+
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK