This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OGCS] metagenome; Human gut stool
HIT:
106 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181427690
OGCS01005679
[OGCS] metagenome; Human gut stool
5
79
+
Ile2
CAT
[ENA]
¢þ
>WENV181427673
OGCS01003209
[OGCS] metagenome; Human gut stool
36
121
+
Leu
TAA
[ENA]
¢þ
>WENV181427688
OGCS01005511
[OGCS] metagenome; Human gut stool
54
129
+
Pro
TGG
[ENA]
¢þ
>WENV181427680
OGCS01003929
[OGCS] metagenome; Human gut stool
61
135
+
Ala
TGC
[ENA]
¢þ
>WENV181427648
OGCS01001032
[OGCS] metagenome; Human gut stool
81
169
+
Ser
GCT
[ENA]
¢þ
>WENV181427675
OGCS01003439
[OGCS] metagenome; Human gut stool
108
35
-
Lys
CTT
[ENA]
¢þ
>WENV181427647
OGCS01000972
[OGCS] metagenome; Human gut stool
112
184
+
Arg
CCG
[ENA]
¢þ
>WENV181427685
OGCS01003946
[OGCS] metagenome; Human gut stool
129
55
-
Asp
GTC
[ENA]
¢þ
>WENV181427689
OGCS01005511
[OGCS] metagenome; Human gut stool
135
206
+
Gly
TCC
[ENA]
¢þ
>WENV181427678
OGCS01003863
[OGCS] metagenome; Human gut stool
161
234
+
Ala
TGC
[ENA]
¢þ
>WENV181427679
OGCS01003889
[OGCS] metagenome; Human gut stool
166
93
-
Arg
CCT
[ENA]
¢þ
>WENV181427676
OGCS01003490
[OGCS] metagenome; Human gut stool
171
244
+
Gln
CTG
[ENA]
¢þ
>WENV181427654
OGCS01001429
[OGCS] metagenome; Human gut stool
191
117
-
fMet
CAT
[ENA]
¢þ
>WENV181427677
OGCS01003577
[OGCS] metagenome; Human gut stool
200
127
-
fMet
CAT
[ENA]
¢þ
>WENV181427699
OGCS01007972
[OGCS] metagenome; Human gut stool
206
293
+
Ser
CGA
[ENA]
¢þ
>WENV181427700
OGCS01008172
[OGCS] metagenome; Human gut stool
215
290
+
Trp
CCA
[ENA]
¢þ
>WENV181427684
OGCS01003946
[OGCS] metagenome; Human gut stool
221
147
-
Ile2
CAT
[ENA]
¢þ
>WENV181427643
OGCS01000762
[OGCS] metagenome; Human gut stool
234
307
+
Pro
CGG
[ENA]
¢þ
>WENV181427655
OGCS01001472
[OGCS] metagenome; Human gut stool
261
334
+
Trp
CCA
[ENA]
¢þ
>WENV181427697
OGCS01006838
[OGCS] metagenome; Human gut stool
279
204
-
Arg
ACG
[ENA]
¢þ
>WENV181427667
OGCS01002484
[OGCS] metagenome; Human gut stool
286
215
-
Gly
GCC
[ENA]
¢þ
>WENV181427674
OGCS01003347
[OGCS] metagenome; Human gut stool
308
394
+
Leu
CAG
[ENA]
¢þ
>WENV181427692
OGCS01006380
[OGCS] metagenome; Human gut stool
315
387
+
Asn
GTT
[ENA]
¢þ
>WENV181427698
OGCS01007407
[OGCS] metagenome; Human gut stool
318
405
+
Ser
GCT
[ENA]
¢þ
>WENV181427653
OGCS01001429
[OGCS] metagenome; Human gut stool
321
238
-
Tyr
GTA
[ENA]
¢þ
>WENV181427683
OGCS01003946
[OGCS] metagenome; Human gut stool
323
251
-
Thr
TGT
[ENA]
¢þ
>WENV181427701
OGCS01008315
[OGCS] metagenome; Human gut stool
373
296
-
Arg
CCT
[ENA]
¢þ
>WENV181427696
OGCS01006838
[OGCS] metagenome; Human gut stool
423
338
-
Leu
TAA
[ENA]
¢þ
>WENV181427662
OGCS01001872
[OGCS] metagenome; Human gut stool
423
501
+
Leu
CAA
[ENA]
¢þ
>WENV181427693
OGCS01006380
[OGCS] metagenome; Human gut stool
446
517
+
Glu
TTC
[ENA]
¢þ
>WENV181427682
OGCS01003946
[OGCS] metagenome; Human gut stool
495
423
-
Glu
TTC
[ENA]
¢þ
>WENV181427695
OGCS01006838
[OGCS] metagenome; Human gut stool
521
448
-
Val
TAC
[ENA]
¢þ
>WENV181427687
OGCS01004998
[OGCS] metagenome; Human gut stool
533
459
-
Ile2
CAT
[ENA]
¢þ
>WENV181427694
OGCS01006380
[OGCS] metagenome; Human gut stool
544
616
+
Thr
TGT
[ENA]
¢þ
>WENV181427661
OGCS01001797
[OGCS] metagenome; Human gut stool
544
619
+
Pro
GGG
[ENA]
¢þ
>WENV181427681
OGCS01003946
[OGCS] metagenome; Human gut stool
583
510
-
Asn
GTT
[ENA]
¢þ
>WENV181427686
OGCS01004455
[OGCS] metagenome; Human gut stool
631
703
+
Arg
CCT
[ENA]
¢þ
>WENV181427691
OGCS01006017
[OGCS] metagenome; Human gut stool
640
565
-
His
GTG
[ENA]
¢þ
>WENV181427657
OGCS01001607
[OGCS] metagenome; Human gut stool
687
761
+
Ala
GGC
[ENA]
¢þ
>WENV181427640
OGCS01000477
[OGCS] metagenome; Human gut stool
761
688
-
Gly
CCC
[ENA]
¢þ
>WENV181427628
OGCS01000144
[OGCS] metagenome; Human gut stool
793
719
-
Cys
GCA
[ENA]
¢þ
>WENV181427642
OGCS01000559
[OGCS] metagenome; Human gut stool
833
760
-
Trp
CCA
[ENA]
¢þ
>WENV181427663
OGCS01002152
[OGCS] metagenome; Human gut stool
874
798
-
Trp
CCA
[ENA]
¢þ
>WENV181427652
OGCS01001393
[OGCS] metagenome; Human gut stool
961
887
-
Ala
GGC
[ENA]
¢þ
>WENV181427672
OGCS01002666
[OGCS] metagenome; Human gut stool
983
908
-
Thr
GGT
[ENA]
¢þ
>WENV181427671
OGCS01002666
[OGCS] metagenome; Human gut stool
1063
987
-
Asp
GTC
[ENA]
¢þ
>WENV181427670
OGCS01002666
[OGCS] metagenome; Human gut stool
1142
1067
-
Val
TAC
[ENA]
¢þ
>WENV181427659
OGCS01001700
[OGCS] metagenome; Human gut stool
1159
1087
-
Thr
GGT
[ENA]
¢þ
>WENV181427666
OGCS01002406
[OGCS] metagenome; Human gut stool
1179
1104
-
Val
GAC
[ENA]
¢þ
>WENV181427669
OGCS01002666
[OGCS] metagenome; Human gut stool
1225
1150
-
Gly
GCC
[ENA]
¢þ
>WENV181427621
OGCS01000069
[OGCS] metagenome; Human gut stool
1267
1182
-
Leu
TAA
[ENA]
¢þ
>WENV181427658
OGCS01001700
[OGCS] metagenome; Human gut stool
1336
1253
-
Tyr
GTA
[ENA]
¢þ
>WENV181427620
OGCS01000069
[OGCS] metagenome; Human gut stool
1356
1283
-
Gly
GCC
[ENA]
¢þ
>WENV181427668
OGCS01002510
[OGCS] metagenome; Human gut stool
1370
1298
-
Glu
TTC
[ENA]
¢þ
>WENV181427638
OGCS01000416
[OGCS] metagenome; Human gut stool
1449
1377
-
Arg
CCT
[ENA]
¢þ
>WENV181427665
OGCS01002362
[OGCS] metagenome; Human gut stool
1471
1396
-
Lys
CTT
[ENA]
¢þ
>WENV181427604
OGCS01000014
[OGCS] metagenome; Human gut stool
1520
1593
+
fMet
CAT
[ENA]
¢þ
>WENV181427664
OGCS01002292
[OGCS] metagenome; Human gut stool
1524
1450
-
Ile2
CAT
[ENA]
¢þ
>WENV181427635
OGCS01000244
[OGCS] metagenome; Human gut stool
1539
1614
+
Val
TAC
[ENA]
¢þ
>WENV181427660
OGCS01001791
[OGCS] metagenome; Human gut stool
1850
1779
-
Gln
CTG
[ENA]
¢þ
>WENV181427656
OGCS01001513
[OGCS] metagenome; Human gut stool
2025
1941
-
Leu
CAA
[ENA]
¢þ
>WENV181427651
OGCS01001260
[OGCS] metagenome; Human gut stool
2163
2089
-
Ala
TGC
[ENA]
¢þ
>WENV181427646
OGCS01000837
[OGCS] metagenome; Human gut stool
2244
2168
-
Ala
TGC
[ENA]
¢þ
>WENV181427650
OGCS01001260
[OGCS] metagenome; Human gut stool
2254
2180
-
Ile
GAT
[ENA]
¢þ
>WENV181427645
OGCS01000837
[OGCS] metagenome; Human gut stool
2337
2263
-
Ile
GAT
[ENA]
¢þ
>WENV181427639
OGCS01000438
[OGCS] metagenome; Human gut stool
2407
2480
+
Gly
GCC
[ENA]
¢þ
>WENV181427634
OGCS01000201
[OGCS] metagenome; Human gut stool
2488
2406
-
Leu
TAG
[ENA]
¢þ
>WENV181427649
OGCS01001032
[OGCS] metagenome; Human gut stool
2757
2840
+
Leu
TAG
[ENA]
¢þ
>WENV181427613
OGCS01000038
[OGCS] metagenome; Human gut stool
2902
2830
-
Glu
TTC
[ENA]
¢þ
>WENV181427631
OGCS01000186
[OGCS] metagenome; Human gut stool
3328
3404
+
Val
TAC
[ENA]
¢þ
>WENV181427644
OGCS01000780
[OGCS] metagenome; Human gut stool
3431
3515
+
Leu
CAA
[ENA]
¢þ
>WENV181427641
OGCS01000510
[OGCS] metagenome; Human gut stool
4231
4306
+
Lys
TTT
[ENA]
¢þ
>WENV181427636
OGCS01000303
[OGCS] metagenome; Human gut stool
5763
5837
+
Arg
TCT
[ENA]
¢þ
>WENV181427616
OGCS01000049
[OGCS] metagenome; Human gut stool
5921
5850
-
Gly
CCC
[ENA]
¢þ
>WENV181427615
OGCS01000049
[OGCS] metagenome; Human gut stool
6026
5953
-
Thr
CGT
[ENA]
¢þ
>WENV181427637
OGCS01000378
[OGCS] metagenome; Human gut stool
6104
6175
+
Gln
TTG
[ENA]
¢þ
>WENV181427618
OGCS01000062
[OGCS] metagenome; Human gut stool
7401
7313
-
Ser
GGA
[ENA]
¢þ
>WENV181427632
OGCS01000190
[OGCS] metagenome; Human gut stool
8610
8525
-
Ser
TGA
[ENA]
¢þ
>WENV181427633
OGCS01000198
[OGCS] metagenome; Human gut stool
9666
9593
-
Thr
CGT
[ENA]
¢þ
>WENV181427619
OGCS01000064
[OGCS] metagenome; Human gut stool
9706
9788
+
Leu
TAG
[ENA]
¢þ
>WENV181427625
OGCS01000086
[OGCS] metagenome; Human gut stool
10238
10312
+
Asn
GTT
[ENA]
¢þ
>WENV181427630
OGCS01000149
[OGCS] metagenome; Human gut stool
10403
10330
-
Phe
GAA
[ENA]
¢þ
>WENV181427629
OGCS01000149
[OGCS] metagenome; Human gut stool
10559
10632
+
Pro
CGG
[ENA]
¢þ
>WENV181427605
OGCS01000017
[OGCS] metagenome; Human gut stool
10571
10496
-
Arg
TCT
[ENA]
¢þ
>WENV181427602
OGCS01000013
[OGCS] metagenome; Human gut stool
11370
11457
+
Ser
GCT
[ENA]
¢þ
>WENV181427603
OGCS01000013
[OGCS] metagenome; Human gut stool
11485
11557
+
Glu
CTC
[ENA]
¢þ
>WENV181427611
OGCS01000030
[OGCS] metagenome; Human gut stool
11737
11650
-
Leu
TAA
[ENA]
¢þ
>WENV181427627
OGCS01000126
[OGCS] metagenome; Human gut stool
12084
12011
-
Trp
CCA
[ENA]
¢þ
>WENV181427624
OGCS01000079
[OGCS] metagenome; Human gut stool
12351
12426
+
His
GTG
[ENA]
¢þ
>WENV181427626
OGCS01000126
[OGCS] metagenome; Human gut stool
13484
13412
-
Thr
GGT
[ENA]
¢þ
>WENV181427610
OGCS01000028
[OGCS] metagenome; Human gut stool
13574
13500
-
Asn
GTT
[ENA]
¢þ
>WENV181427601
OGCS01000012
[OGCS] metagenome; Human gut stool
13780
13707
-
Lys
CTT
[ENA]
¢þ
>WENV181427608
OGCS01000027
[OGCS] metagenome; Human gut stool
14275
14201
-
Pro
TGG
[ENA]
¢þ
>WENV181427617
OGCS01000057
[OGCS] metagenome; Human gut stool
15257
15180
-
Ile2
CAT
[ENA]
¢þ
>WENV181427622
OGCS01000072
[OGCS] metagenome; Human gut stool
16455
16381
-
Met
CAT
[ENA]
¢þ
>WENV181427612
OGCS01000037
[OGCS] metagenome; Human gut stool
17572
17654
+
Tyr
GTA
[ENA]
¢þ
>WENV181427614
OGCS01000046
[OGCS] metagenome; Human gut stool
18142
18213
+
Cys
GCA
[ENA]
¢þ
>WENV181427623
OGCS01000074
[OGCS] metagenome; Human gut stool
18526
18599
+
Lys
TTT
[ENA]
¢þ
>WENV181427607
OGCS01000025
[OGCS] metagenome; Human gut stool
24496
24422
-
Asp
GTC
[ENA]
¢þ
>WENV181427606
OGCS01000025
[OGCS] metagenome; Human gut stool
31369
31442
+
Lys
CTT
[ENA]
¢þ
>WENV181427609
OGCS01000028
[OGCS] metagenome; Human gut stool
38504
38420
-
Leu
CAA
[ENA]
¢þ
>WENV181427598
OGCS01000009
[OGCS] metagenome; Human gut stool
60214
60287
+
Phe
GAA
[ENA]
¢þ
>WENV181427599
OGCS01000009
[OGCS] metagenome; Human gut stool
63850
63935
+
Ser
TGA
[ENA]
¢þ
>WENV181427600
OGCS01000009
[OGCS] metagenome; Human gut stool
69444
69518
+
Thr
TGT
[ENA]
¢þ
>WENV181427596
OGCS01000004
[OGCS] metagenome; Human gut stool
81667
81738
+
Gln
TTG
[ENA]
¢þ
>WENV181427597
OGCS01000004
[OGCS] metagenome; Human gut stool
94267
94195
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK