This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OGDZ] metagenome; Human gut stool
HIT:
144 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181452219
OGDZ01001708
[OGDZ] metagenome; Human gut stool
35
110
+
Val
TAC
[ENA]
¢þ
>WENV181452179
OGDZ01000296
[OGDZ] metagenome; Human gut stool
46
137
+
Ser
GGA
[ENA]
¢þ
>WENV181452233
OGDZ01002041
[OGDZ] metagenome; Human gut stool
75
1
-
Ala
TGC
[ENA]
¢þ
>WENV181452178
OGDZ01000287
[OGDZ] metagenome; Human gut stool
76
1
-
Val
GAC
[ENA]
¢þ
>WENV181452234
OGDZ01002068
[OGDZ] metagenome; Human gut stool
76
152
+
Asn
GTT
[ENA]
¢þ
>WENV181452277
OGDZ01010406
[OGDZ] metagenome; Human gut stool
84
157
+
Lys
CTT
[ENA]
¢þ
>WENV181452260
OGDZ01005064
[OGDZ] metagenome; Human gut stool
115
42
-
Asp
GTC
[ENA]
¢þ
>WENV181452231
OGDZ01002032
[OGDZ] metagenome; Human gut stool
117
46
-
Gln
TTG
[ENA]
¢þ
>WENV181452220
OGDZ01001708
[OGDZ] metagenome; Human gut stool
122
197
+
Thr
TGT
[ENA]
¢þ
>WENV181452137
OGDZ01000013
[OGDZ] metagenome; Human gut stool
133
218
+
Ser
TGA
[ENA]
¢þ
>WENV181452230
OGDZ01001833
[OGDZ] metagenome; Human gut stool
140
68
-
Arg
CCT
[ENA]
¢þ
>WENV181452276
OGDZ01009904
[OGDZ] metagenome; Human gut stool
144
68
-
Arg
ACG
[ENA]
¢þ
>WENV181452232
OGDZ01002041
[OGDZ] metagenome; Human gut stool
166
92
-
Ile
GAT
[ENA]
¢þ
>WENV181452270
OGDZ01007419
[OGDZ] metagenome; Human gut stool
166
237
+
Arg
CCT
[ENA]
¢þ
>WENV181452272
OGDZ01008201
[OGDZ] metagenome; Human gut stool
175
103
-
Asn
GTT
[ENA]
¢þ
>WENV181452145
OGDZ01000037
[OGDZ] metagenome; Human gut stool
184
109
-
Lys
CTT
[ENA]
¢þ
>WENV181452203
OGDZ01000732
[OGDZ] metagenome; Human gut stool
200
117
-
Leu
TAA
[ENA]
¢þ
>WENV181452238
OGDZ01002542
[OGDZ] metagenome; Human gut stool
202
130
-
Glu
CTC
[ENA]
¢þ
>WENV181452221
OGDZ01001708
[OGDZ] metagenome; Human gut stool
202
285
+
Tyr
GTA
[ENA]
¢þ
>WENV181452259
OGDZ01005064
[OGDZ] metagenome; Human gut stool
207
133
-
Ile2
CAT
[ENA]
¢þ
>WENV181452167
OGDZ01000169
[OGDZ] metagenome; Human gut stool
217
135
-
Leu
TAG
[ENA]
¢þ
>WENV181452253
OGDZ01003383
[OGDZ] metagenome; Human gut stool
238
165
-
Phe
GAA
[ENA]
¢þ
>WENV181452174
OGDZ01000216
[OGDZ] metagenome; Human gut stool
238
165
-
fMet
CAT
[ENA]
¢þ
>WENV181452241
OGDZ01002845
[OGDZ] metagenome; Human gut stool
255
328
+
Ala
TGC
[ENA]
¢þ
>WENV181452144
OGDZ01000037
[OGDZ] metagenome; Human gut stool
262
188
-
Glu
CTC
[ENA]
¢þ
>WENV181452243
OGDZ01003283
[OGDZ] metagenome; Human gut stool
287
362
+
Arg
CCT
[ENA]
¢þ
>WENV181452222
OGDZ01001708
[OGDZ] metagenome; Human gut stool
294
369
+
Gln
TTG
[ENA]
¢þ
>WENV181452213
OGDZ01001308
[OGDZ] metagenome; Human gut stool
298
375
+
Ile
GAT
[ENA]
¢þ
>WENV181452258
OGDZ01005064
[OGDZ] metagenome; Human gut stool
308
236
-
Thr
TGT
[ENA]
¢þ
>WENV181452255
OGDZ01005036
[OGDZ] metagenome; Human gut stool
312
239
-
Gln
CTG
[ENA]
¢þ
>WENV181452252
OGDZ01003383
[OGDZ] metagenome; Human gut stool
316
242
-
fMet
CAT
[ENA]
¢þ
>WENV181452236
OGDZ01002270
[OGDZ] metagenome; Human gut stool
317
244
-
Glu
CTC
[ENA]
¢þ
>WENV181452263
OGDZ01005221
[OGDZ] metagenome; Human gut stool
340
267
-
Thr
CGT
[ENA]
¢þ
>WENV181452186
OGDZ01000468
[OGDZ] metagenome; Human gut stool
347
434
+
Ser
TGA
[ENA]
¢þ
>WENV181452275
OGDZ01009904
[OGDZ] metagenome; Human gut stool
359
284
-
Lys
TTT
[ENA]
¢þ
>WENV181452208
OGDZ01000890
[OGDZ] metagenome; Human gut stool
372
299
-
Pro
CGG
[ENA]
¢þ
>WENV181452214
OGDZ01001308
[OGDZ] metagenome; Human gut stool
379
452
+
Ala
TGC
[ENA]
¢þ
>WENV181452223
OGDZ01001708
[OGDZ] metagenome; Human gut stool
380
455
+
Lys
TTT
[ENA]
¢þ
>WENV181452273
OGDZ01009183
[OGDZ] metagenome; Human gut stool
412
485
+
fMet
CAT
[ENA]
¢þ
>WENV181452268
OGDZ01006933
[OGDZ] metagenome; Human gut stool
432
507
+
Pro
TGG
[ENA]
¢þ
>WENV181452274
OGDZ01009904
[OGDZ] metagenome; Human gut stool
439
364
-
Val
TAC
[ENA]
¢þ
>WENV181452251
OGDZ01003383
[OGDZ] metagenome; Human gut stool
443
360
-
Tyr
GTA
[ENA]
¢þ
>WENV181452262
OGDZ01005221
[OGDZ] metagenome; Human gut stool
448
376
-
Glu
CTC
[ENA]
¢þ
>WENV181452159
OGDZ01000103
[OGDZ] metagenome; Human gut stool
448
521
+
Thr
CGT
[ENA]
¢þ
>WENV181452271
OGDZ01007471
[OGDZ] metagenome; Human gut stool
457
532
+
Arg
CCG
[ENA]
¢þ
>WENV181452187
OGDZ01000468
[OGDZ] metagenome; Human gut stool
467
560
+
Ser
GCT
[ENA]
¢þ
>WENV181452224
OGDZ01001708
[OGDZ] metagenome; Human gut stool
469
557
+
Leu
TAA
[ENA]
¢þ
>WENV181452257
OGDZ01005064
[OGDZ] metagenome; Human gut stool
480
408
-
Glu
TTC
[ENA]
¢þ
>WENV181452267
OGDZ01006806
[OGDZ] metagenome; Human gut stool
508
583
+
Asn
GTT
[ENA]
¢þ
>WENV181452269
OGDZ01006933
[OGDZ] metagenome; Human gut stool
513
583
+
Gly
TCC
[ENA]
¢þ
>WENV181452265
OGDZ01005308
[OGDZ] metagenome; Human gut stool
515
425
-
Ser
GGA
[ENA]
¢þ
>WENV181452170
OGDZ01000191
[OGDZ] metagenome; Human gut stool
532
607
+
Thr
CGT
[ENA]
¢þ
>WENV181452261
OGDZ01005221
[OGDZ] metagenome; Human gut stool
536
462
-
Pro
CGG
[ENA]
¢þ
>WENV181452235
OGDZ01002186
[OGDZ] metagenome; Human gut stool
541
469
-
Glu
TTC
[ENA]
¢þ
>WENV181452225
OGDZ01001708
[OGDZ] metagenome; Human gut stool
564
634
+
Gly
TCC
[ENA]
¢þ
>WENV181452250
OGDZ01003383
[OGDZ] metagenome; Human gut stool
575
504
-
Thr
TGT
[ENA]
¢þ
>WENV181452256
OGDZ01005064
[OGDZ] metagenome; Human gut stool
580
506
-
Asn
GTT
[ENA]
¢þ
>WENV181452175
OGDZ01000232
[OGDZ] metagenome; Human gut stool
594
671
+
Arg
CCT
[ENA]
¢þ
>WENV181452249
OGDZ01003383
[OGDZ] metagenome; Human gut stool
656
581
-
Val
TAC
[ENA]
¢þ
>WENV181452226
OGDZ01001708
[OGDZ] metagenome; Human gut stool
656
731
+
Arg
TCT
[ENA]
¢þ
>WENV181452264
OGDZ01005308
[OGDZ] metagenome; Human gut stool
658
572
-
Ser
TGA
[ENA]
¢þ
>WENV181452200
OGDZ01000681
[OGDZ] metagenome; Human gut stool
736
811
+
Arg
TCT
[ENA]
¢þ
>WENV181452266
OGDZ01005542
[OGDZ] metagenome; Human gut stool
749
677
-
Ile2
CAT
[ENA]
¢þ
>WENV181452248
OGDZ01003383
[OGDZ] metagenome; Human gut stool
766
691
-
Asp
GTC
[ENA]
¢þ
>WENV181452227
OGDZ01001708
[OGDZ] metagenome; Human gut stool
779
853
+
His
GTG
[ENA]
¢þ
>WENV181452201
OGDZ01000681
[OGDZ] metagenome; Human gut stool
818
894
+
His
GTG
[ENA]
¢þ
>WENV181452210
OGDZ01001173
[OGDZ] metagenome; Human gut stool
852
936
+
Leu
CAA
[ENA]
¢þ
>WENV181452247
OGDZ01003383
[OGDZ] metagenome; Human gut stool
856
782
-
Ile2
CAT
[ENA]
¢þ
>WENV181452240
OGDZ01002798
[OGDZ] metagenome; Human gut stool
879
951
+
Thr
GGT
[ENA]
¢þ
>WENV181452228
OGDZ01001708
[OGDZ] metagenome; Human gut stool
901
974
+
Lys
TTT
[ENA]
¢þ
>WENV181452246
OGDZ01003383
[OGDZ] metagenome; Human gut stool
933
860
-
Thr
TGT
[ENA]
¢þ
>WENV181452195
OGDZ01000535
[OGDZ] metagenome; Human gut stool
968
880
-
Ser
CGA
[ENA]
¢þ
>WENV181452229
OGDZ01001708
[OGDZ] metagenome; Human gut stool
977
1059
+
Leu
TAG
[ENA]
¢þ
>WENV181452245
OGDZ01003383
[OGDZ] metagenome; Human gut stool
1017
945
-
Val
TAC
[ENA]
¢þ
>WENV181452177
OGDZ01000245
[OGDZ] metagenome; Human gut stool
1028
945
-
Tyr
GTA
[ENA]
¢þ
>WENV181452254
OGDZ01003600
[OGDZ] metagenome; Human gut stool
1043
969
-
Cys
GCA
[ENA]
¢þ
>WENV181452242
OGDZ01003038
[OGDZ] metagenome; Human gut stool
1111
1185
+
Met
CAT
[ENA]
¢þ
>WENV181452194
OGDZ01000535
[OGDZ] metagenome; Human gut stool
1118
1046
-
Gln
CTG
[ENA]
¢þ
>WENV181452244
OGDZ01003383
[OGDZ] metagenome; Human gut stool
1123
1048
-
Asp
GTC
[ENA]
¢þ
>WENV181452211
OGDZ01001175
[OGDZ] metagenome; Human gut stool
1221
1293
+
Gly
GCC
[ENA]
¢þ
>WENV181452164
OGDZ01000115
[OGDZ] metagenome; Human gut stool
1250
1176
-
Asp
GTC
[ENA]
¢þ
>WENV181452204
OGDZ01000750
[OGDZ] metagenome; Human gut stool
1332
1407
+
Ala
GGC
[ENA]
¢þ
>WENV181452239
OGDZ01002650
[OGDZ] metagenome; Human gut stool
1455
1370
-
Ser
TGA
[ENA]
¢þ
>WENV181452212
OGDZ01001301
[OGDZ] metagenome; Human gut stool
1476
1402
-
Gly
TCC
[ENA]
¢þ
>WENV181452237
OGDZ01002421
[OGDZ] metagenome; Human gut stool
1572
1500
-
Cys
GCA
[ENA]
¢þ
>WENV181452216
OGDZ01001560
[OGDZ] metagenome; Human gut stool
1620
1701
+
Leu
TAG
[ENA]
¢þ
>WENV181452199
OGDZ01000668
[OGDZ] metagenome; Human gut stool
1880
1795
-
Tyr
GTA
[ENA]
¢þ
>WENV181452189
OGDZ01000526
[OGDZ] metagenome; Human gut stool
1915
1990
+
Thr
GGT
[ENA]
¢þ
>WENV181452218
OGDZ01001620
[OGDZ] metagenome; Human gut stool
1969
1884
-
Leu
AAG
[ENA]
¢þ
>WENV181452217
OGDZ01001560
[OGDZ] metagenome; Human gut stool
2001
1918
-
Leu
GAG
[ENA]
¢þ
>WENV181452215
OGDZ01001460
[OGDZ] metagenome; Human gut stool
2145
2230
+
Ser
TGA
[ENA]
¢þ
>WENV181452198
OGDZ01000668
[OGDZ] metagenome; Human gut stool
2265
2191
-
Thr
TGT
[ENA]
¢þ
>WENV181452196
OGDZ01000585
[OGDZ] metagenome; Human gut stool
2306
2218
-
Ser
GGA
[ENA]
¢þ
>WENV181452193
OGDZ01000532
[OGDZ] metagenome; Human gut stool
2628
2702
+
Asp
GTC
[ENA]
¢þ
>WENV181452180
OGDZ01000315
[OGDZ] metagenome; Human gut stool
2782
2707
-
Arg
CCG
[ENA]
¢þ
>WENV181452206
OGDZ01000825
[OGDZ] metagenome; Human gut stool
2891
2964
+
Lys
CTT
[ENA]
¢þ
>WENV181452209
OGDZ01001019
[OGDZ] metagenome; Human gut stool
2950
2876
-
Ala
GGC
[ENA]
¢þ
>WENV181452181
OGDZ01000328
[OGDZ] metagenome; Human gut stool
3125
3214
+
Ser
GCT
[ENA]
¢þ
>WENV181452158
OGDZ01000095
[OGDZ] metagenome; Human gut stool
3308
3384
+
fMet
CAT
[ENA]
¢þ
>WENV181452197
OGDZ01000631
[OGDZ] metagenome; Human gut stool
3434
3350
-
Leu
CAG
[ENA]
¢þ
>WENV181452207
OGDZ01000845
[OGDZ] metagenome; Human gut stool
3590
3515
-
Ala
CGC
[ENA]
¢þ
>WENV181452205
OGDZ01000766
[OGDZ] metagenome; Human gut stool
3865
3790
-
Ala
TGC
[ENA]
¢þ
>WENV181452183
OGDZ01000390
[OGDZ] metagenome; Human gut stool
3878
3806
-
Arg
CCT
[ENA]
¢þ
>WENV181452192
OGDZ01000526
[OGDZ] metagenome; Human gut stool
3973
3898
-
Thr
GGT
[ENA]
¢þ
>WENV181452149
OGDZ01000046
[OGDZ] metagenome; Human gut stool
3998
3927
-
Glu
TTC
[ENA]
¢þ
>WENV181452191
OGDZ01000526
[OGDZ] metagenome; Human gut stool
4053
3977
-
Asp
GTC
[ENA]
¢þ
>WENV181452202
OGDZ01000719
[OGDZ] metagenome; Human gut stool
4122
4195
+
Lys
TTT
[ENA]
¢þ
>WENV181452148
OGDZ01000046
[OGDZ] metagenome; Human gut stool
4166
4090
-
Met
CAT
[ENA]
¢þ
>WENV181452190
OGDZ01000526
[OGDZ] metagenome; Human gut stool
4311
4236
-
Trp
CCA
[ENA]
¢þ
>WENV181452188
OGDZ01000513
[OGDZ] metagenome; Human gut stool
4485
4409
-
Ile2
CAT
[ENA]
¢þ
>WENV181452151
OGDZ01000050
[OGDZ] metagenome; Human gut stool
5630
5555
-
Gly
GCC
[ENA]
¢þ
>WENV181452150
OGDZ01000050
[OGDZ] metagenome; Human gut stool
5742
5667
-
Phe
GAA
[ENA]
¢þ
>WENV181452139
OGDZ01000016
[OGDZ] metagenome; Human gut stool
6070
6144
+
Thr
TGT
[ENA]
¢þ
>WENV181452185
OGDZ01000429
[OGDZ] metagenome; Human gut stool
6245
6335
+
Ser
CGA
[ENA]
¢þ
>WENV181452184
OGDZ01000423
[OGDZ] metagenome; Human gut stool
6294
6368
+
Arg
TCT
[ENA]
¢þ
>WENV181452165
OGDZ01000116
[OGDZ] metagenome; Human gut stool
6866
6941
+
Pro
TGG
[ENA]
¢þ
>WENV181452182
OGDZ01000334
[OGDZ] metagenome; Human gut stool
7851
7776
-
Pro
GGG
[ENA]
¢þ
>WENV181452155
OGDZ01000065
[OGDZ] metagenome; Human gut stool
7863
7789
-
Glu
CTC
[ENA]
¢þ
>WENV181452154
OGDZ01000065
[OGDZ] metagenome; Human gut stool
8305
8218
-
Ser
GCT
[ENA]
¢þ
>WENV181452176
OGDZ01000234
[OGDZ] metagenome; Human gut stool
8477
8401
-
Val
CAC
[ENA]
¢þ
>WENV181452135
OGDZ01000007
[OGDZ] metagenome; Human gut stool
8728
8652
-
Val
TAC
[ENA]
¢þ
>WENV181452153
OGDZ01000065
[OGDZ] metagenome; Human gut stool
9058
8984
-
Cys
GCA
[ENA]
¢þ
>WENV181452173
OGDZ01000214
[OGDZ] metagenome; Human gut stool
11114
11039
-
Pro
CGG
[ENA]
¢þ
>WENV181452172
OGDZ01000214
[OGDZ] metagenome; Human gut stool
11216
11143
-
Gln
CTG
[ENA]
¢þ
>WENV181452169
OGDZ01000174
[OGDZ] metagenome; Human gut stool
11330
11257
-
Trp
CCA
[ENA]
¢þ
>WENV181452171
OGDZ01000203
[OGDZ] metagenome; Human gut stool
11597
11668
+
Gln
CTG
[ENA]
¢þ
>WENV181452168
OGDZ01000174
[OGDZ] metagenome; Human gut stool
12695
12623
-
Thr
GGT
[ENA]
¢þ
>WENV181452156
OGDZ01000067
[OGDZ] metagenome; Human gut stool
13022
12948
-
Thr
TGT
[ENA]
¢þ
>WENV181452143
OGDZ01000022
[OGDZ] metagenome; Human gut stool
13155
13229
+
Asn
GTT
[ENA]
¢þ
>WENV181452166
OGDZ01000136
[OGDZ] metagenome; Human gut stool
13352
13278
-
Ala
GGC
[ENA]
¢þ
>WENV181452160
OGDZ01000106
[OGDZ] metagenome; Human gut stool
13846
13770
-
Arg
ACG
[ENA]
¢þ
>WENV181452161
OGDZ01000113
[OGDZ] metagenome; Human gut stool
15771
15844
+
Gly
GCC
[ENA]
¢þ
>WENV181452162
OGDZ01000113
[OGDZ] metagenome; Human gut stool
15891
15972
+
Leu
CAG
[ENA]
¢þ
>WENV181452163
OGDZ01000113
[OGDZ] metagenome; Human gut stool
16004
16077
+
Gly
GCC
[ENA]
¢þ
>WENV181452157
OGDZ01000077
[OGDZ] metagenome; Human gut stool
17326
17401
+
Gly
CCC
[ENA]
¢þ
>WENV181452152
OGDZ01000058
[OGDZ] metagenome; Human gut stool
18886
18803
-
Leu
CAA
[ENA]
¢þ
>WENV181452136
OGDZ01000010
[OGDZ] metagenome; Human gut stool
20439
20351
-
Ser
GGA
[ENA]
¢þ
>WENV181452138
OGDZ01000014
[OGDZ] metagenome; Human gut stool
23975
23904
-
Gln
TTG
[ENA]
¢þ
>WENV181452147
OGDZ01000041
[OGDZ] metagenome; Human gut stool
24959
25034
+
His
GTG
[ENA]
¢þ
>WENV181452146
OGDZ01000038
[OGDZ] metagenome; Human gut stool
25573
25645
+
Arg
CCG
[ENA]
¢þ
>WENV181452140
OGDZ01000020
[OGDZ] metagenome; Human gut stool
31825
31899
+
Ile2
CAT
[ENA]
¢þ
>WENV181452142
OGDZ01000021
[OGDZ] metagenome; Human gut stool
32845
32772
-
Pro
CGG
[ENA]
¢þ
>WENV181452141
OGDZ01000021
[OGDZ] metagenome; Human gut stool
33026
33101
+
Phe
GAA
[ENA]
¢þ
>WENV181452134
OGDZ01000002
[OGDZ] metagenome; Human gut stool
54309
54383
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK