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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA gene List
[OGEV] metagenome; Human gut stool
HIT:
67 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181471178
OGEV01000803
[OGEV] metagenome; Human gut stool
1
73
+
Glu
TTC
[ENA]
¢þ
>WENV181471183
OGEV01001273
[OGEV] metagenome; Human gut stool
1
74
+
Gly
GCC
[ENA]
¢þ
>WENV181471184
OGEV01001315
[OGEV] metagenome; Human gut stool
85
160
+
Thr
GGT
[ENA]
¢þ
>WENV181471196
OGEV01002769
[OGEV] metagenome; Human gut stool
93
18
-
Trp
CCA
[ENA]
¢þ
>WENV181471165
OGEV01000508
[OGEV] metagenome; Human gut stool
128
55
-
Thr
TGT
[ENA]
¢þ
>WENV181471191
OGEV01002333
[OGEV] metagenome; Human gut stool
213
286
+
Gln
CTG
[ENA]
¢þ
>WENV181471198
OGEV01004875
[OGEV] metagenome; Human gut stool
231
306
+
Arg
TCT
[ENA]
¢þ
>WENV181471181
OGEV01000928
[OGEV] metagenome; Human gut stool
266
192
-
Arg
TCT
[ENA]
¢þ
>WENV181471189
OGEV01001808
[OGEV] metagenome; Human gut stool
289
217
-
Cys
GCA
[ENA]
¢þ
>WENV181471199
OGEV01004875
[OGEV] metagenome; Human gut stool
314
390
+
His
GTG
[ENA]
¢þ
>WENV181471192
OGEV01002333
[OGEV] metagenome; Human gut stool
318
393
+
Pro
CGG
[ENA]
¢þ
>WENV181471153
OGEV01000126
[OGEV] metagenome; Human gut stool
328
256
-
Thr
GGT
[ENA]
¢þ
>WENV181471193
OGEV01002486
[OGEV] metagenome; Human gut stool
330
404
+
Asp
GTC
[ENA]
¢þ
>WENV181471164
OGEV01000508
[OGEV] metagenome; Human gut stool
336
264
-
Asn
GTT
[ENA]
¢þ
>WENV181471167
OGEV01000648
[OGEV] metagenome; Human gut stool
395
468
+
Thr
CGT
[ENA]
¢þ
>WENV181471187
OGEV01001628
[OGEV] metagenome; Human gut stool
418
493
+
Pro
TGG
[ENA]
¢þ
>WENV181471146
OGEV01000038
[OGEV] metagenome; Human gut stool
465
539
+
Ile2
CAT
[ENA]
¢þ
>WENV181471152
OGEV01000126
[OGEV] metagenome; Human gut stool
504
421
-
Tyr
GTA
[ENA]
¢þ
>WENV181471200
OGEV01005196
[OGEV] metagenome; Human gut stool
505
421
-
Tyr
GTA
[ENA]
¢þ
>WENV181471155
OGEV01000149
[OGEV] metagenome; Human gut stool
565
639
+
Glu
CTC
[ENA]
¢þ
>WENV181471194
OGEV01002486
[OGEV] metagenome; Human gut stool
573
648
+
Gly
GCC
[ENA]
¢þ
>WENV181471197
OGEV01003618
[OGEV] metagenome; Human gut stool
593
666
+
Gln
TTG
[ENA]
¢þ
>WENV181471156
OGEV01000149
[OGEV] metagenome; Human gut stool
643
718
+
Lys
CTT
[ENA]
¢þ
>WENV181471148
OGEV01000073
[OGEV] metagenome; Human gut stool
648
735
+
Ser
GCT
[ENA]
¢þ
>WENV181471195
OGEV01002486
[OGEV] metagenome; Human gut stool
678
752
+
Cys
GCA
[ENA]
¢þ
>WENV181471166
OGEV01000550
[OGEV] metagenome; Human gut stool
751
839
+
Ser
GGA
[ENA]
¢þ
>WENV181471154
OGEV01000132
[OGEV] metagenome; Human gut stool
787
712
-
Lys
TTT
[ENA]
¢þ
>WENV181471190
OGEV01002040
[OGEV] metagenome; Human gut stool
800
716
-
Leu
CAA
[ENA]
¢þ
>WENV181471176
OGEV01000701
[OGEV] metagenome; Human gut stool
888
814
-
Thr
TGT
[ENA]
¢þ
>WENV181471175
OGEV01000701
[OGEV] metagenome; Human gut stool
966
893
-
His
GTG
[ENA]
¢þ
>WENV181471188
OGEV01001692
[OGEV] metagenome; Human gut stool
981
905
-
Arg
CCG
[ENA]
¢þ
>WENV181471182
OGEV01000940
[OGEV] metagenome; Human gut stool
1040
1115
+
Val
GAC
[ENA]
¢þ
>WENV181471174
OGEV01000701
[OGEV] metagenome; Human gut stool
1043
972
-
Arg
TCG
[ENA]
¢þ
>WENV181471143
OGEV01000020
[OGEV] metagenome; Human gut stool
1064
990
-
Ala
TGC
[ENA]
¢þ
>WENV181471149
OGEV01000073
[OGEV] metagenome; Human gut stool
1090
1164
+
Glu
CTC
[ENA]
¢þ
>WENV181471186
OGEV01001467
[OGEV] metagenome; Human gut stool
1119
1193
+
Ala
GGC
[ENA]
¢þ
>WENV181471173
OGEV01000701
[OGEV] metagenome; Human gut stool
1127
1056
-
Gln
TTG
[ENA]
¢þ
>WENV181471142
OGEV01000020
[OGEV] metagenome; Human gut stool
1155
1081
-
Ile
GAT
[ENA]
¢þ
>WENV181471185
OGEV01001384
[OGEV] metagenome; Human gut stool
1166
1094
-
Pro
TGG
[ENA]
¢þ
>WENV181471180
OGEV01000833
[OGEV] metagenome; Human gut stool
1218
1291
+
Lys
CTT
[ENA]
¢þ
>WENV181471172
OGEV01000701
[OGEV] metagenome; Human gut stool
1318
1245
-
Phe
GAA
[ENA]
¢þ
>WENV181471171
OGEV01000701
[OGEV] metagenome; Human gut stool
1398
1327
-
Gln
CTG
[ENA]
¢þ
>WENV181471170
OGEV01000701
[OGEV] metagenome; Human gut stool
1490
1404
-
Ser
TGA
[ENA]
¢þ
>WENV181471169
OGEV01000701
[OGEV] metagenome; Human gut stool
1572
1497
-
Arg
ACG
[ENA]
¢þ
>WENV181471159
OGEV01000317
[OGEV] metagenome; Human gut stool
1630
1555
-
His
GTG
[ENA]
¢þ
>WENV181471168
OGEV01000701
[OGEV] metagenome; Human gut stool
1663
1578
-
Ser
GCT
[ENA]
¢þ
>WENV181471163
OGEV01000501
[OGEV] metagenome; Human gut stool
1749
1676
-
Gly
CCC
[ENA]
¢þ
>WENV181471162
OGEV01000341
[OGEV] metagenome; Human gut stool
1894
1820
-
Asp
GTC
[ENA]
¢þ
>WENV181471179
OGEV01000814
[OGEV] metagenome; Human gut stool
2097
2026
-
Gln
CTG
[ENA]
¢þ
>WENV181471177
OGEV01000754
[OGEV] metagenome; Human gut stool
2162
2246
+
Ser
TGA
[ENA]
¢þ
>WENV181471145
OGEV01000036
[OGEV] metagenome; Human gut stool
2467
2540
+
fMet
CAT
[ENA]
¢þ
>WENV181471161
OGEV01000340
[OGEV] metagenome; Human gut stool
4310
4237
-
Phe
GAA
[ENA]
¢þ
>WENV181471158
OGEV01000249
[OGEV] metagenome; Human gut stool
4541
4615
+
Met
CAT
[ENA]
¢þ
>WENV181471147
OGEV01000042
[OGEV] metagenome; Human gut stool
4610
4681
+
Gln
TTG
[ENA]
¢þ
>WENV181471160
OGEV01000326
[OGEV] metagenome; Human gut stool
4955
4882
-
Pro
CGG
[ENA]
¢þ
>WENV181471157
OGEV01000168
[OGEV] metagenome; Human gut stool
5620
5547
-
Trp
CCA
[ENA]
¢þ
>WENV181471136
OGEV01000011
[OGEV] metagenome; Human gut stool
7335
7407
+
Arg
CCT
[ENA]
¢þ
>WENV181471151
OGEV01000099
[OGEV] metagenome; Human gut stool
8062
7986
-
Val
TAC
[ENA]
¢þ
>WENV181471144
OGEV01000033
[OGEV] metagenome; Human gut stool
9655
9583
-
Arg
CCG
[ENA]
¢þ
>WENV181471150
OGEV01000074
[OGEV] metagenome; Human gut stool
11674
11601
-
Trp
CCA
[ENA]
¢þ
>WENV181471134
OGEV01000003
[OGEV] metagenome; Human gut stool
12572
12490
-
Leu
TAG
[ENA]
¢þ
>WENV181471135
OGEV01000006
[OGEV] metagenome; Human gut stool
14799
14874
+
Pro
GGG
[ENA]
¢þ
>WENV181471137
OGEV01000012
[OGEV] metagenome; Human gut stool
15327
15253
-
Thr
TGT
[ENA]
¢þ
>WENV181471138
OGEV01000013
[OGEV] metagenome; Human gut stool
16604
16689
+
Ser
TGA
[ENA]
¢þ
>WENV181471139
OGEV01000015
[OGEV] metagenome; Human gut stool
16999
16925
-
Asn
GTT
[ENA]
¢þ
>WENV181471141
OGEV01000018
[OGEV] metagenome; Human gut stool
18986
18913
-
Sup
TCA
[ENA]
¢þ
>WENV181471140
OGEV01000018
[OGEV] metagenome; Human gut stool
19659
19586
-
Sup
TTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK