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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OGGN] metagenome; Human gut stool
HIT:
159 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181506698
OGGN01005893
[OGGN] metagenome; Human gut stool
2
92
+
Ser
CGA
[ENA]
¢þ
>WENV181506668
OGGN01001849
[OGGN] metagenome; Human gut stool
11
86
+
Trp
CCA
[ENA]
¢þ
>WENV181506682
OGGN01004333
[OGGN] metagenome; Human gut stool
31
105
+
Ala
TGC
[ENA]
¢þ
>WENV181506718
OGGN01010330
[OGGN] metagenome; Human gut stool
37
111
+
Val
TAC
[ENA]
¢þ
>WENV181506643
OGGN01000263
[OGGN] metagenome; Human gut stool
74
1
-
Trp
CCA
[ENA]
¢þ
>WENV181506604
OGGN01000077
[OGGN] metagenome; Human gut stool
82
156
+
Asn
GTT
[ENA]
¢þ
>WENV181506657
OGGN01000655
[OGGN] metagenome; Human gut stool
89
14
-
Pro
CGG
[ENA]
¢þ
>WENV181506605
OGGN01000079
[OGGN] metagenome; Human gut stool
92
166
+
Arg
CCG
[ENA]
¢þ
>WENV181506683
OGGN01004560
[OGGN] metagenome; Human gut stool
107
182
+
Pro
TGG
[ENA]
¢þ
>WENV181506719
OGGN01010330
[OGGN] metagenome; Human gut stool
129
201
+
Thr
TGT
[ENA]
¢þ
>WENV181506669
OGGN01001934
[OGGN] metagenome; Human gut stool
139
213
+
Ala
TGC
[ENA]
¢þ
>WENV181506592
OGGN01000037
[OGGN] metagenome; Human gut stool
152
76
-
Val
TAC
[ENA]
¢þ
>WENV181506650
OGGN01000329
[OGGN] metagenome; Human gut stool
165
240
+
Arg
CCT
[ENA]
¢þ
>WENV181506679
OGGN01004023
[OGGN] metagenome; Human gut stool
174
98
-
Gln
CTG
[ENA]
¢þ
>WENV181506709
OGGN01007809
[OGGN] metagenome; Human gut stool
179
86
-
Ser
GCT
[ENA]
¢þ
>WENV181506714
OGGN01009352
[OGGN] metagenome; Human gut stool
181
255
+
Ile
GAT
[ENA]
¢þ
>WENV181506702
OGGN01006278
[OGGN] metagenome; Human gut stool
182
255
+
Gln
CTG
[ENA]
¢þ
>WENV181506603
OGGN01000071
[OGGN] metagenome; Human gut stool
185
111
-
Met
CAT
[ENA]
¢þ
>WENV181506607
OGGN01000113
[OGGN] metagenome; Human gut stool
191
103
-
Ser
GGA
[ENA]
¢þ
>WENV181506711
OGGN01008505
[OGGN] metagenome; Human gut stool
197
126
-
Glu
TTC
[ENA]
¢þ
>WENV181506684
OGGN01004560
[OGGN] metagenome; Human gut stool
199
270
+
Gly
TCC
[ENA]
¢þ
>WENV181506660
OGGN01000954
[OGGN] metagenome; Human gut stool
207
131
-
Pro
CGG
[ENA]
¢þ
>WENV181506691
OGGN01004941
[OGGN] metagenome; Human gut stool
207
132
-
Thr
GGT
[ENA]
¢þ
>WENV181506720
OGGN01010330
[OGGN] metagenome; Human gut stool
212
287
+
Ile2
CAT
[ENA]
¢þ
>WENV181506704
OGGN01006406
[OGGN] metagenome; Human gut stool
224
296
+
Gln
CTG
[ENA]
¢þ
>WENV181506712
OGGN01008953
[OGGN] metagenome; Human gut stool
230
318
+
Ser
CGA
[ENA]
¢þ
>WENV181506678
OGGN01004023
[OGGN] metagenome; Human gut stool
264
180
-
Leu
GAG
[ENA]
¢þ
>WENV181506706
OGGN01007437
[OGGN] metagenome; Human gut stool
265
350
+
Leu
AAG
[ENA]
¢þ
>WENV181506715
OGGN01009352
[OGGN] metagenome; Human gut stool
270
344
+
Ala
TGC
[ENA]
¢þ
>WENV181506703
OGGN01006278
[OGGN] metagenome; Human gut stool
285
358
+
Pro
CGG
[ENA]
¢þ
>WENV181506690
OGGN01004941
[OGGN] metagenome; Human gut stool
287
211
-
Asp
GTC
[ENA]
¢þ
>WENV181506685
OGGN01004560
[OGGN] metagenome; Human gut stool
297
370
+
Arg
TCT
[ENA]
¢þ
>WENV181506708
OGGN01007809
[OGGN] metagenome; Human gut stool
299
212
-
Ser
TGA
[ENA]
¢þ
>WENV181506692
OGGN01005553
[OGGN] metagenome; Human gut stool
327
253
-
Ala
GGC
[ENA]
¢þ
>WENV181506721
OGGN01010330
[OGGN] metagenome; Human gut stool
336
411
+
Asp
GTC
[ENA]
¢þ
>WENV181506716
OGGN01009388
[OGGN] metagenome; Human gut stool
340
265
-
Arg
TCT
[ENA]
¢þ
>WENV181506701
OGGN01006277
[OGGN] metagenome; Human gut stool
379
466
+
Ser
GCT
[ENA]
¢þ
>WENV181506689
OGGN01004941
[OGGN] metagenome; Human gut stool
391
316
-
Gly
GCC
[ENA]
¢þ
>WENV181506651
OGGN01000401
[OGGN] metagenome; Human gut stool
397
321
-
Met
CAT
[ENA]
¢þ
>WENV181506713
OGGN01008962
[OGGN] metagenome; Human gut stool
397
470
+
Glu
CTC
[ENA]
¢þ
>WENV181506677
OGGN01003875
[OGGN] metagenome; Human gut stool
420
330
-
Ser
GGA
[ENA]
¢þ
>WENV181506686
OGGN01004560
[OGGN] metagenome; Human gut stool
426
500
+
His
GTG
[ENA]
¢þ
>WENV181506670
OGGN01001953
[OGGN] metagenome; Human gut stool
429
357
-
Thr
CGT
[ENA]
¢þ
>WENV181506676
OGGN01002710
[OGGN] metagenome; Human gut stool
432
515
+
Tyr
GTA
[ENA]
¢þ
>WENV181506699
OGGN01006219
[OGGN] metagenome; Human gut stool
442
512
+
Gly
CCC
[ENA]
¢þ
>WENV181506710
OGGN01007898
[OGGN] metagenome; Human gut stool
445
371
-
Glu
CTC
[ENA]
¢þ
>WENV181506707
OGGN01007562
[OGGN] metagenome; Human gut stool
453
380
-
Trp
CCA
[ENA]
¢þ
>WENV181506674
OGGN01002488
[OGGN] metagenome; Human gut stool
460
546
+
Ser
TGA
[ENA]
¢þ
>WENV181506680
OGGN01004112
[OGGN] metagenome; Human gut stool
466
395
-
Gln
TTG
[ENA]
¢þ
>WENV181506694
OGGN01005564
[OGGN] metagenome; Human gut stool
468
396
-
Lys
TTT
[ENA]
¢þ
>WENV181506653
OGGN01000520
[OGGN] metagenome; Human gut stool
488
562
+
Val
CAC
[ENA]
¢þ
>WENV181506717
OGGN01009781
[OGGN] metagenome; Human gut stool
497
424
-
Thr
CGT
[ENA]
¢þ
>WENV181506695
OGGN01005609
[OGGN] metagenome; Human gut stool
504
578
+
Asn
GTT
[ENA]
¢þ
>WENV181506705
OGGN01007078
[OGGN] metagenome; Human gut stool
506
578
+
Gly
GCC
[ENA]
¢þ
>WENV181506617
OGGN01000217
[OGGN] metagenome; Human gut stool
512
584
+
Val
TAC
[ENA]
¢þ
>WENV181506700
OGGN01006219
[OGGN] metagenome; Human gut stool
520
595
+
Ile
GAT
[ENA]
¢þ
>WENV181506687
OGGN01004560
[OGGN] metagenome; Human gut stool
525
597
+
Gln
TTG
[ENA]
¢þ
>WENV181506618
OGGN01000217
[OGGN] metagenome; Human gut stool
587
659
+
Asp
GTC
[ENA]
¢þ
>WENV181506696
OGGN01005609
[OGGN] metagenome; Human gut stool
591
682
+
Ser
GGA
[ENA]
¢þ
>WENV181506697
OGGN01005739
[OGGN] metagenome; Human gut stool
597
525
-
Thr
GGT
[ENA]
¢þ
>WENV181506688
OGGN01004941
[OGGN] metagenome; Human gut stool
630
555
-
Phe
GAA
[ENA]
¢þ
>WENV181506675
OGGN01002488
[OGGN] metagenome; Human gut stool
644
734
+
Ser
GGA
[ENA]
¢þ
>WENV181506681
OGGN01004271
[OGGN] metagenome; Human gut stool
663
734
+
Gln
CTG
[ENA]
¢þ
>WENV181506619
OGGN01000217
[OGGN] metagenome; Human gut stool
678
750
+
Lys
TTT
[ENA]
¢þ
>WENV181506693
OGGN01005564
[OGGN] metagenome; Human gut stool
700
626
-
Arg
TCT
[ENA]
¢þ
>WENV181506652
OGGN01000466
[OGGN] metagenome; Human gut stool
709
792
+
Leu
CAA
[ENA]
¢þ
>WENV181506620
OGGN01000217
[OGGN] metagenome; Human gut stool
755
838
+
Leu
TAG
[ENA]
¢þ
>WENV181506621
OGGN01000217
[OGGN] metagenome; Human gut stool
850
922
+
Thr
TGT
[ENA]
¢þ
>WENV181506655
OGGN01000596
[OGGN] metagenome; Human gut stool
857
770
-
Ser
TGA
[ENA]
¢þ
>WENV181506659
OGGN01000862
[OGGN] metagenome; Human gut stool
890
815
-
Ile
GAT
[ENA]
¢þ
>WENV181506672
OGGN01002103
[OGGN] metagenome; Human gut stool
907
982
+
Phe
GAA
[ENA]
¢þ
>WENV181506663
OGGN01001016
[OGGN] metagenome; Human gut stool
916
992
+
Arg
ACG
[ENA]
¢þ
>WENV181506622
OGGN01000217
[OGGN] metagenome; Human gut stool
929
1000
+
Gly
GCC
[ENA]
¢þ
>WENV181506608
OGGN01000150
[OGGN] metagenome; Human gut stool
931
1008
+
Gln
TTG
[ENA]
¢þ
>WENV181506638
OGGN01000239
[OGGN] metagenome; Human gut stool
960
885
-
Thr
TGT
[ENA]
¢þ
>WENV181506664
OGGN01001016
[OGGN] metagenome; Human gut stool
1005
1096
+
Ser
GCT
[ENA]
¢þ
>WENV181506623
OGGN01000217
[OGGN] metagenome; Human gut stool
1007
1092
+
Leu
TAA
[ENA]
¢þ
>WENV181506673
OGGN01002103
[OGGN] metagenome; Human gut stool
1011
1086
+
Phe
GAA
[ENA]
¢þ
>WENV181506656
OGGN01000621
[OGGN] metagenome; Human gut stool
1013
938
-
Gly
GCC
[ENA]
¢þ
>WENV181506671
OGGN01001977
[OGGN] metagenome; Human gut stool
1046
1121
+
Gln
CTG
[ENA]
¢þ
>WENV181506624
OGGN01000217
[OGGN] metagenome; Human gut stool
1107
1180
+
Arg
ACG
[ENA]
¢þ
>WENV181506665
OGGN01001328
[OGGN] metagenome; Human gut stool
1109
1024
-
Leu
AAG
[ENA]
¢þ
>WENV181506625
OGGN01000217
[OGGN] metagenome; Human gut stool
1187
1262
+
Pro
TGG
[ENA]
¢þ
>WENV181506662
OGGN01000968
[OGGN] metagenome; Human gut stool
1188
1098
-
Ser
CGA
[ENA]
¢þ
>WENV181506626
OGGN01000217
[OGGN] metagenome; Human gut stool
1266
1341
+
Met
CAT
[ENA]
¢þ
>WENV181506667
OGGN01001494
[OGGN] metagenome; Human gut stool
1292
1217
-
Asn
GTT
[ENA]
¢þ
>WENV181506666
OGGN01001363
[OGGN] metagenome; Human gut stool
1358
1431
+
Thr
GGT
[ENA]
¢þ
>WENV181506627
OGGN01000217
[OGGN] metagenome; Human gut stool
1358
1433
+
Ile2
CAT
[ENA]
¢þ
>WENV181506642
OGGN01000263
[OGGN] metagenome; Human gut stool
1437
1365
-
Thr
GGT
[ENA]
¢þ
>WENV181506628
OGGN01000217
[OGGN] metagenome; Human gut stool
1452
1541
+
Ser
TGA
[ENA]
¢þ
>WENV181506649
OGGN01000300
[OGGN] metagenome; Human gut stool
1481
1406
-
His
GTG
[ENA]
¢þ
>WENV181506661
OGGN01000965
[OGGN] metagenome; Human gut stool
1539
1464
-
Val
GAC
[ENA]
¢þ
>WENV181506629
OGGN01000217
[OGGN] metagenome; Human gut stool
1551
1624
+
fMet
CAT
[ENA]
¢þ
>WENV181506648
OGGN01000300
[OGGN] metagenome; Human gut stool
1570
1494
-
Arg
TCT
[ENA]
¢þ
>WENV181506641
OGGN01000263
[OGGN] metagenome; Human gut stool
1615
1532
-
Tyr
GTA
[ENA]
¢þ
>WENV181506630
OGGN01000217
[OGGN] metagenome; Human gut stool
1628
1702
+
Asp
GTC
[ENA]
¢þ
>WENV181506647
OGGN01000300
[OGGN] metagenome; Human gut stool
1657
1581
-
Pro
TGG
[ENA]
¢þ
>WENV181506658
OGGN01000664
[OGGN] metagenome; Human gut stool
1678
1764
+
Leu
CAG
[ENA]
¢þ
>WENV181506640
OGGN01000263
[OGGN] metagenome; Human gut stool
1725
1651
-
Thr
TGT
[ENA]
¢þ
>WENV181506631
OGGN01000217
[OGGN] metagenome; Human gut stool
1727
1802
+
Phe
GAA
[ENA]
¢þ
>WENV181506632
OGGN01000217
[OGGN] metagenome; Human gut stool
1806
1890
+
Tyr
GTA
[ENA]
¢þ
>WENV181506633
OGGN01000217
[OGGN] metagenome; Human gut stool
1901
1974
+
Trp
CCA
[ENA]
¢þ
>WENV181506634
OGGN01000217
[OGGN] metagenome; Human gut stool
1981
2054
+
His
GTG
[ENA]
¢þ
>WENV181506635
OGGN01000217
[OGGN] metagenome; Human gut stool
2064
2137
+
Gln
TTG
[ENA]
¢þ
>WENV181506636
OGGN01000217
[OGGN] metagenome; Human gut stool
2145
2232
+
Leu
CAA
[ENA]
¢þ
>WENV181506654
OGGN01000582
[OGGN] metagenome; Human gut stool
2157
2083
-
Ala
TGC
[ENA]
¢þ
>WENV181506616
OGGN01000205
[OGGN] metagenome; Human gut stool
2165
2240
+
Thr
CGT
[ENA]
¢þ
>WENV181506612
OGGN01000171
[OGGN] metagenome; Human gut stool
2282
2207
-
Glu
CTC
[ENA]
¢þ
>WENV181506613
OGGN01000173
[OGGN] metagenome; Human gut stool
2806
2891
+
Tyr
GTA
[ENA]
¢þ
>WENV181506644
OGGN01000288
[OGGN] metagenome; Human gut stool
2980
3055
+
Lys
TTT
[ENA]
¢þ
>WENV181506614
OGGN01000173
[OGGN] metagenome; Human gut stool
3021
3095
+
Thr
GGT
[ENA]
¢þ
>WENV181506645
OGGN01000288
[OGGN] metagenome; Human gut stool
3075
3150
+
Lys
CTT
[ENA]
¢þ
>WENV181506646
OGGN01000288
[OGGN] metagenome; Human gut stool
3183
3258
+
Lys
CTT
[ENA]
¢þ
>WENV181506615
OGGN01000195
[OGGN] metagenome; Human gut stool
3341
3416
+
Lys
CTT
[ENA]
¢þ
>WENV181506639
OGGN01000255
[OGGN] metagenome; Human gut stool
3457
3543
+
Leu
TAG
[ENA]
¢þ
>WENV181506637
OGGN01000220
[OGGN] metagenome; Human gut stool
3922
3997
+
Val
TAC
[ENA]
¢þ
>WENV181506609
OGGN01000166
[OGGN] metagenome; Human gut stool
4431
4506
+
Ala
GGC
[ENA]
¢þ
>WENV181506610
OGGN01000166
[OGGN] metagenome; Human gut stool
4515
4590
+
Glu
TTC
[ENA]
¢þ
>WENV181506611
OGGN01000167
[OGGN] metagenome; Human gut stool
5176
5251
+
Ala
CGC
[ENA]
¢þ
>WENV181506596
OGGN01000038
[OGGN] metagenome; Human gut stool
5703
5620
-
Tyr
GTA
[ENA]
¢þ
>WENV181506595
OGGN01000038
[OGGN] metagenome; Human gut stool
5886
5803
-
Tyr
GTA
[ENA]
¢þ
>WENV181506598
OGGN01000040
[OGGN] metagenome; Human gut stool
6062
6135
+
Gly
CCC
[ENA]
¢þ
>WENV181506600
OGGN01000051
[OGGN] metagenome; Human gut stool
6971
7045
+
Ala
GGC
[ENA]
¢þ
>WENV181506588
OGGN01000032
[OGGN] metagenome; Human gut stool
7335
7419
+
Leu
CAA
[ENA]
¢þ
>WENV181506584
OGGN01000027
[OGGN] metagenome; Human gut stool
7916
8001
+
Ser
TGA
[ENA]
¢þ
>WENV181506599
OGGN01000045
[OGGN] metagenome; Human gut stool
10473
10389
-
Leu
CAA
[ENA]
¢þ
>WENV181506606
OGGN01000083
[OGGN] metagenome; Human gut stool
11677
11751
+
Ile2
CAT
[ENA]
¢þ
>WENV181506602
OGGN01000056
[OGGN] metagenome; Human gut stool
11710
11637
-
Phe
GAA
[ENA]
¢þ
>WENV181506601
OGGN01000056
[OGGN] metagenome; Human gut stool
11874
11947
+
Pro
CGG
[ENA]
¢þ
>WENV181506570
OGGN01000009
[OGGN] metagenome; Human gut stool
13797
13710
-
Ser
GCT
[ENA]
¢þ
>WENV181506569
OGGN01000009
[OGGN] metagenome; Human gut stool
13881
13808
-
Glu
CTC
[ENA]
¢þ
>WENV181506568
OGGN01000009
[OGGN] metagenome; Human gut stool
13991
13904
-
Ser
GCT
[ENA]
¢þ
>WENV181506574
OGGN01000012
[OGGN] metagenome; Human gut stool
15796
15722
-
Thr
TGT
[ENA]
¢þ
>WENV181506589
OGGN01000032
[OGGN] metagenome; Human gut stool
16825
16753
-
Glu
TTC
[ENA]
¢þ
>WENV181506585
OGGN01000027
[OGGN] metagenome; Human gut stool
19025
18951
-
Asp
GTC
[ENA]
¢þ
>WENV181506587
OGGN01000030
[OGGN] metagenome; Human gut stool
22508
22581
+
Phe
GAA
[ENA]
¢þ
>WENV181506581
OGGN01000021
[OGGN] metagenome; Human gut stool
22862
22788
-
Thr
CGT
[ENA]
¢þ
>WENV181506593
OGGN01000038
[OGGN] metagenome; Human gut stool
27757
27831
+
His
GTG
[ENA]
¢þ
>WENV181506594
OGGN01000038
[OGGN] metagenome; Human gut stool
27864
27938
+
His
GTG
[ENA]
¢þ
>WENV181506590
OGGN01000034
[OGGN] metagenome; Human gut stool
31388
31461
+
Gly
GCC
[ENA]
¢þ
>WENV181506591
OGGN01000034
[OGGN] metagenome; Human gut stool
31477
31562
+
Leu
TAA
[ENA]
¢þ
>WENV181506597
OGGN01000039
[OGGN] metagenome; Human gut stool
32931
33016
+
Ser
TGA
[ENA]
¢þ
>WENV181506578
OGGN01000017
[OGGN] metagenome; Human gut stool
34152
34079
-
Lys
TTT
[ENA]
¢þ
>WENV181506583
OGGN01000023
[OGGN] metagenome; Human gut stool
37884
37812
-
Arg
CCT
[ENA]
¢þ
>WENV181506580
OGGN01000021
[OGGN] metagenome; Human gut stool
44116
44042
-
Arg
TCT
[ENA]
¢þ
>WENV181506579
OGGN01000021
[OGGN] metagenome; Human gut stool
44216
44142
-
Arg
TCT
[ENA]
¢þ
>WENV181506582
OGGN01000022
[OGGN] metagenome; Human gut stool
47013
47084
+
Gln
TTG
[ENA]
¢þ
>WENV181506586
OGGN01000028
[OGGN] metagenome; Human gut stool
48793
48875
+
Leu
TAG
[ENA]
¢þ
>WENV181506563
OGGN01000001
[OGGN] metagenome; Human gut stool
51998
52073
+
Pro
TGG
[ENA]
¢þ
>WENV181506567
OGGN01000009
[OGGN] metagenome; Human gut stool
52854
52782
-
Arg
CCG
[ENA]
¢þ
>WENV181506575
OGGN01000015
[OGGN] metagenome; Human gut stool
66161
66235
+
Cys
GCA
[ENA]
¢þ
>WENV181506576
OGGN01000015
[OGGN] metagenome; Human gut stool
66248
66321
+
Lys
CTT
[ENA]
¢þ
>WENV181506565
OGGN01000005
[OGGN] metagenome; Human gut stool
69971
69900
-
Gln
CTG
[ENA]
¢þ
>WENV181506564
OGGN01000005
[OGGN] metagenome; Human gut stool
70082
70011
-
Gln
CTG
[ENA]
¢þ
>WENV181506577
OGGN01000017
[OGGN] metagenome; Human gut stool
71218
71293
+
Pro
GGG
[ENA]
¢þ
>WENV181506571
OGGN01000011
[OGGN] metagenome; Human gut stool
90579
90652
+
fMet
CAT
[ENA]
¢þ
>WENV181506572
OGGN01000011
[OGGN] metagenome; Human gut stool
90667
90740
+
fMet
CAT
[ENA]
¢þ
>WENV181506573
OGGN01000011
[OGGN] metagenome; Human gut stool
92574
92499
-
Val
TAC
[ENA]
¢þ
>WENV181506566
OGGN01000008
[OGGN] metagenome; Human gut stool
123453
123527
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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