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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OGLL] metagenome; Human gut stool
HIT:
137 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181606045
OGLL01003778
[OGLL] metagenome; Human gut stool
42
118
+
Ile
GAT
[ENA]
¢þ
>WENV181606057
OGLL01005547
[OGLL] metagenome; Human gut stool
61
134
+
Glu
CTC
[ENA]
¢þ
>WENV181606049
OGLL01004728
[OGLL] metagenome; Human gut stool
68
143
+
Asn
GTT
[ENA]
¢þ
>WENV181606043
OGLL01003364
[OGLL] metagenome; Human gut stool
97
172
+
Val
GAC
[ENA]
¢þ
>WENV181606036
OGLL01002499
[OGLL] metagenome; Human gut stool
100
175
+
Asp
GTC
[ENA]
¢þ
>WENV181605955
OGLL01000016
[OGLL] metagenome; Human gut stool
108
184
+
Val
TAC
[ENA]
¢þ
>WENV181606029
OGLL01001130
[OGLL] metagenome; Human gut stool
122
35
-
Ser
GCT
[ENA]
¢þ
>WENV181606039
OGLL01002633
[OGLL] metagenome; Human gut stool
127
39
-
Ser
TGA
[ENA]
¢þ
>WENV181606063
OGLL01008249
[OGLL] metagenome; Human gut stool
128
211
+
Leu
CAG
[ENA]
¢þ
>WENV181606015
OGLL01000448
[OGLL] metagenome; Human gut stool
132
58
-
Ile2
CAT
[ENA]
¢þ
>WENV181605969
OGLL01000053
[OGLL] metagenome; Human gut stool
158
246
+
Ser
GGA
[ENA]
¢þ
>WENV181605977
OGLL01000099
[OGLL] metagenome; Human gut stool
163
89
-
Pro
TGG
[ENA]
¢þ
>WENV181606042
OGLL01003299
[OGLL] metagenome; Human gut stool
168
81
-
Ser
CGA
[ENA]
¢þ
>WENV181606032
OGLL01001385
[OGLL] metagenome; Human gut stool
179
97
-
Leu
TAG
[ENA]
¢þ
>WENV181606014
OGLL01000448
[OGLL] metagenome; Human gut stool
208
136
-
Thr
TGT
[ENA]
¢þ
>WENV181606059
OGLL01006382
[OGLL] metagenome; Human gut stool
209
298
+
Ser
GCT
[ENA]
¢þ
>WENV181606037
OGLL01002499
[OGLL] metagenome; Human gut stool
210
286
+
Val
TAC
[ENA]
¢þ
>WENV181606058
OGLL01006319
[OGLL] metagenome; Human gut stool
212
297
+
Leu
AAG
[ENA]
¢þ
>WENV181606019
OGLL01000769
[OGLL] metagenome; Human gut stool
256
181
-
Pro
TGG
[ENA]
¢þ
>WENV181605997
OGLL01000171
[OGLL] metagenome; Human gut stool
296
220
-
Asp
GTC
[ENA]
¢þ
>WENV181606013
OGLL01000448
[OGLL] metagenome; Human gut stool
310
239
-
Glu
TTC
[ENA]
¢þ
>WENV181606038
OGLL01002499
[OGLL] metagenome; Human gut stool
311
397
+
Leu
TAA
[ENA]
¢þ
>WENV181606060
OGLL01006916
[OGLL] metagenome; Human gut stool
348
423
+
Thr
GGT
[ENA]
¢þ
>WENV181606061
OGLL01007141
[OGLL] metagenome; Human gut stool
353
277
-
Arg
CCT
[ENA]
¢þ
>WENV181605996
OGLL01000171
[OGLL] metagenome; Human gut stool
378
303
-
Val
TAC
[ENA]
¢þ
>WENV181606048
OGLL01004416
[OGLL] metagenome; Human gut stool
385
314
-
Glu
TTC
[ENA]
¢þ
>WENV181606040
OGLL01002638
[OGLL] metagenome; Human gut stool
386
461
+
Ile
GAT
[ENA]
¢þ
>WENV181606044
OGLL01003586
[OGLL] metagenome; Human gut stool
411
339
-
Gly
GCC
[ENA]
¢þ
>WENV181606046
OGLL01003876
[OGLL] metagenome; Human gut stool
418
491
+
Gln
CTG
[ENA]
¢þ
>WENV181606012
OGLL01000448
[OGLL] metagenome; Human gut stool
425
353
-
Asn
GTT
[ENA]
¢þ
>WENV181606052
OGLL01005092
[OGLL] metagenome; Human gut stool
439
365
-
Thr
TGT
[ENA]
¢þ
>WENV181606002
OGLL01000384
[OGLL] metagenome; Human gut stool
441
516
+
Gly
TCC
[ENA]
¢þ
>WENV181606062
OGLL01007551
[OGLL] metagenome; Human gut stool
444
360
-
Tyr
GTA
[ENA]
¢þ
>WENV181606056
OGLL01005305
[OGLL] metagenome; Human gut stool
455
379
-
Ala
TGC
[ENA]
¢þ
>WENV181605995
OGLL01000171
[OGLL] metagenome; Human gut stool
457
383
-
Glu
TTC
[ENA]
¢þ
>WENV181606054
OGLL01005235
[OGLL] metagenome; Human gut stool
504
431
-
Cys
GCA
[ENA]
¢þ
>WENV181606051
OGLL01005092
[OGLL] metagenome; Human gut stool
517
444
-
His
GTG
[ENA]
¢þ
>WENV181606003
OGLL01000384
[OGLL] metagenome; Human gut stool
525
601
+
Ala
TGC
[ENA]
¢þ
>WENV181605994
OGLL01000171
[OGLL] metagenome; Human gut stool
536
460
-
Ile2
CAT
[ENA]
¢þ
>WENV181606047
OGLL01004416
[OGLL] metagenome; Human gut stool
553
477
-
Met
CAT
[ENA]
¢þ
>WENV181606055
OGLL01005305
[OGLL] metagenome; Human gut stool
553
479
-
Ile
GAT
[ENA]
¢þ
>WENV181606041
OGLL01003149
[OGLL] metagenome; Human gut stool
574
650
+
Arg
TCG
[ENA]
¢þ
>WENV181606053
OGLL01005235
[OGLL] metagenome; Human gut stool
582
508
-
Gly
GCC
[ENA]
¢þ
>WENV181606050
OGLL01005092
[OGLL] metagenome; Human gut stool
594
523
-
Sup
TCA
[ENA]
¢þ
>WENV181606033
OGLL01001456
[OGLL] metagenome; Human gut stool
608
522
-
Ser
TGA
[ENA]
¢þ
>WENV181605985
OGLL01000163
[OGLL] metagenome; Human gut stool
651
576
-
Lys
TTT
[ENA]
¢þ
>WENV181606035
OGLL01002200
[OGLL] metagenome; Human gut stool
785
699
-
Leu
CAG
[ENA]
¢þ
>WENV181606034
OGLL01001638
[OGLL] metagenome; Human gut stool
785
713
-
Thr
CGT
[ENA]
¢þ
>WENV181606031
OGLL01001332
[OGLL] metagenome; Human gut stool
786
861
+
His
GTG
[ENA]
¢þ
>WENV181606026
OGLL01000992
[OGLL] metagenome; Human gut stool
815
741
-
Lys
TTT
[ENA]
¢þ
>WENV181606028
OGLL01001130
[OGLL] metagenome; Human gut stool
840
768
-
Cys
GCA
[ENA]
¢þ
>WENV181605976
OGLL01000096
[OGLL] metagenome; Human gut stool
911
837
-
Ile2
CAT
[ENA]
¢þ
>WENV181606001
OGLL01000383
[OGLL] metagenome; Human gut stool
922
851
-
Cys
GCA
[ENA]
¢þ
>WENV181606025
OGLL01000992
[OGLL] metagenome; Human gut stool
939
866
-
Gln
TTG
[ENA]
¢þ
>WENV181606024
OGLL01000992
[OGLL] metagenome; Human gut stool
1027
953
-
His
GTG
[ENA]
¢þ
>WENV181605981
OGLL01000134
[OGLL] metagenome; Human gut stool
1108
1181
+
fMet
CAT
[ENA]
¢þ
>WENV181606023
OGLL01000992
[OGLL] metagenome; Human gut stool
1148
1074
-
Arg
TCT
[ENA]
¢þ
>WENV181606022
OGLL01000992
[OGLL] metagenome; Human gut stool
1223
1153
-
Gly
TCC
[ENA]
¢þ
>WENV181605966
OGLL01000033
[OGLL] metagenome; Human gut stool
1250
1176
-
Met
CAT
[ENA]
¢þ
>WENV181606027
OGLL01001095
[OGLL] metagenome; Human gut stool
1279
1352
+
Lys
CTT
[ENA]
¢þ
>WENV181606021
OGLL01000992
[OGLL] metagenome; Human gut stool
1318
1243
-
Pro
TGG
[ENA]
¢þ
>WENV181606009
OGLL01000410
[OGLL] metagenome; Human gut stool
1335
1407
+
Arg
CCG
[ENA]
¢þ
>WENV181606020
OGLL01000876
[OGLL] metagenome; Human gut stool
1339
1251
-
Ser
GGA
[ENA]
¢þ
>WENV181606030
OGLL01001222
[OGLL] metagenome; Human gut stool
1400
1329
-
Cys
GCA
[ENA]
¢þ
>WENV181605935
OGLL01000001
[OGLL] metagenome; Human gut stool
1583
1509
-
Glu
CTC
[ENA]
¢þ
>WENV181605934
OGLL01000001
[OGLL] metagenome; Human gut stool
1697
1609
-
Ser
GCT
[ENA]
¢þ
>WENV181605933
OGLL01000001
[OGLL] metagenome; Human gut stool
1992
1920
-
Glu
CTC
[ENA]
¢þ
>WENV181605932
OGLL01000001
[OGLL] metagenome; Human gut stool
2081
2009
-
Glu
CTC
[ENA]
¢þ
>WENV181606018
OGLL01000745
[OGLL] metagenome; Human gut stool
2106
2030
-
Arg
CCT
[ENA]
¢þ
>WENV181605931
OGLL01000001
[OGLL] metagenome; Human gut stool
2221
2149
-
Glu
CTC
[ENA]
¢þ
>WENV181605930
OGLL01000001
[OGLL] metagenome; Human gut stool
2335
2247
-
Ser
GCT
[ENA]
¢þ
>WENV181606017
OGLL01000610
[OGLL] metagenome; Human gut stool
2540
2468
-
Thr
TGT
[ENA]
¢þ
>WENV181606006
OGLL01000393
[OGLL] metagenome; Human gut stool
2751
2677
-
Ala
TGC
[ENA]
¢þ
>WENV181606005
OGLL01000393
[OGLL] metagenome; Human gut stool
2842
2768
-
Ile
GAT
[ENA]
¢þ
>WENV181605999
OGLL01000282
[OGLL] metagenome; Human gut stool
2895
2821
-
Asn
GTT
[ENA]
¢þ
>WENV181605984
OGLL01000150
[OGLL] metagenome; Human gut stool
2971
2896
-
Gly
CCC
[ENA]
¢þ
>WENV181606000
OGLL01000304
[OGLL] metagenome; Human gut stool
2991
2917
-
Ala
GGC
[ENA]
¢þ
>WENV181606016
OGLL01000515
[OGLL] metagenome; Human gut stool
3135
3209
+
Asp
GTC
[ENA]
¢þ
>WENV181606010
OGLL01000443
[OGLL] metagenome; Human gut stool
3695
3768
+
Lys
CTT
[ENA]
¢þ
>WENV181606011
OGLL01000448
[OGLL] metagenome; Human gut stool
3730
3657
-
Ala
TGC
[ENA]
¢þ
>WENV181605979
OGLL01000108
[OGLL] metagenome; Human gut stool
3982
3897
-
Ser
TGA
[ENA]
¢þ
>WENV181606004
OGLL01000384
[OGLL] metagenome; Human gut stool
3998
4072
+
Gln
TTG
[ENA]
¢þ
>WENV181606007
OGLL01000397
[OGLL] metagenome; Human gut stool
4006
3933
-
Thr
CGT
[ENA]
¢þ
>WENV181606008
OGLL01000398
[OGLL] metagenome; Human gut stool
4229
4300
+
Gln
CTG
[ENA]
¢þ
>WENV181605972
OGLL01000090
[OGLL] metagenome; Human gut stool
4772
4844
+
Arg
CCT
[ENA]
¢þ
>WENV181605961
OGLL01000030
[OGLL] metagenome; Human gut stool
6035
6109
+
Thr
TGT
[ENA]
¢þ
>WENV181605971
OGLL01000072
[OGLL] metagenome; Human gut stool
9049
8965
-
Leu
CAA
[ENA]
¢þ
>WENV181605998
OGLL01000201
[OGLL] metagenome; Human gut stool
9190
9263
+
Gly
GCC
[ENA]
¢þ
>WENV181605962
OGLL01000032
[OGLL] metagenome; Human gut stool
9348
9422
+
Thr
TGT
[ENA]
¢þ
>WENV181605963
OGLL01000032
[OGLL] metagenome; Human gut stool
9465
9548
+
Tyr
GTA
[ENA]
¢þ
>WENV181605980
OGLL01000124
[OGLL] metagenome; Human gut stool
9482
9409
-
fMet
CAT
[ENA]
¢þ
>WENV181605964
OGLL01000032
[OGLL] metagenome; Human gut stool
9666
9738
+
Thr
GGT
[ENA]
¢þ
>WENV181605970
OGLL01000068
[OGLL] metagenome; Human gut stool
9916
9840
-
Val
TAC
[ENA]
¢þ
>WENV181605968
OGLL01000050
[OGLL] metagenome; Human gut stool
10305
10234
-
Gln
TTG
[ENA]
¢þ
>WENV181605949
OGLL01000012
[OGLL] metagenome; Human gut stool
10335
10262
-
Pro
CGG
[ENA]
¢þ
>WENV181605948
OGLL01000012
[OGLL] metagenome; Human gut stool
10513
10586
+
Phe
GAA
[ENA]
¢þ
>WENV181605987
OGLL01000170
[OGLL] metagenome; Human gut stool
10951
11036
+
Ser
GCT
[ENA]
¢þ
>WENV181605965
OGLL01000032
[OGLL] metagenome; Human gut stool
11031
11104
+
Trp
CCA
[ENA]
¢þ
>WENV181605988
OGLL01000170
[OGLL] metagenome; Human gut stool
11042
11117
+
Arg
ACG
[ENA]
¢þ
>WENV181605975
OGLL01000095
[OGLL] metagenome; Human gut stool
11062
10978
-
Leu
GAG
[ENA]
¢þ
>WENV181605989
OGLL01000170
[OGLL] metagenome; Human gut stool
11124
11210
+
Ser
TGA
[ENA]
¢þ
>WENV181605990
OGLL01000170
[OGLL] metagenome; Human gut stool
11216
11287
+
Gln
CTG
[ENA]
¢þ
>WENV181605991
OGLL01000170
[OGLL] metagenome; Human gut stool
11296
11369
+
Phe
GAA
[ENA]
¢þ
>WENV181605992
OGLL01000170
[OGLL] metagenome; Human gut stool
11378
11460
+
Tyr
GTA
[ENA]
¢þ
>WENV181605986
OGLL01000169
[OGLL] metagenome; Human gut stool
11403
11329
-
Glu
CTC
[ENA]
¢þ
>WENV181605993
OGLL01000170
[OGLL] metagenome; Human gut stool
11467
11538
+
Gln
TTG
[ENA]
¢þ
>WENV181605982
OGLL01000146
[OGLL] metagenome; Human gut stool
11601
11674
+
Thr
TGT
[ENA]
¢þ
>WENV181605973
OGLL01000091
[OGLL] metagenome; Human gut stool
11970
12042
+
Glu
TTC
[ENA]
¢þ
>WENV181605967
OGLL01000040
[OGLL] metagenome; Human gut stool
12139
12064
-
Pro
GGG
[ENA]
¢þ
>WENV181605983
OGLL01000148
[OGLL] metagenome; Human gut stool
14088
14014
-
Pro
TGG
[ENA]
¢þ
>WENV181605950
OGLL01000013
[OGLL] metagenome; Human gut stool
17058
17133
+
His
GTG
[ENA]
¢þ
>WENV181605951
OGLL01000013
[OGLL] metagenome; Human gut stool
17166
17241
+
His
GTG
[ENA]
¢þ
>WENV181605978
OGLL01000100
[OGLL] metagenome; Human gut stool
18964
19039
+
Val
TAC
[ENA]
¢þ
>WENV181605974
OGLL01000092
[OGLL] metagenome; Human gut stool
20210
20122
-
Ser
GGA
[ENA]
¢þ
>WENV181605954
OGLL01000014
[OGLL] metagenome; Human gut stool
23891
23808
-
Leu
TAG
[ENA]
¢þ
>WENV181605957
OGLL01000022
[OGLL] metagenome; Human gut stool
26773
26847
+
Thr
TGT
[ENA]
¢þ
>WENV181605958
OGLL01000022
[OGLL] metagenome; Human gut stool
26864
26946
+
Tyr
GTA
[ENA]
¢þ
>WENV181605959
OGLL01000022
[OGLL] metagenome; Human gut stool
27044
27116
+
Thr
GGT
[ENA]
¢þ
>WENV181605960
OGLL01000022
[OGLL] metagenome; Human gut stool
28465
28538
+
Trp
CCA
[ENA]
¢þ
>WENV181605947
OGLL01000011
[OGLL] metagenome; Human gut stool
59765
59683
-
Tyr
GTA
[ENA]
¢þ
>WENV181605936
OGLL01000002
[OGLL] metagenome; Human gut stool
60533
60615
+
Leu
CAA
[ENA]
¢þ
>WENV181605937
OGLL01000002
[OGLL] metagenome; Human gut stool
60667
60749
+
Leu
CAA
[ENA]
¢þ
>WENV181605956
OGLL01000021
[OGLL] metagenome; Human gut stool
60874
60792
-
Leu
TAG
[ENA]
¢þ
>WENV181605945
OGLL01000009
[OGLL] metagenome; Human gut stool
77475
77402
-
Lys
CTT
[ENA]
¢þ
>WENV181605929
OGLL01000001
[OGLL] metagenome; Human gut stool
82876
82805
-
Gly
CCC
[ENA]
¢þ
>WENV181605928
OGLL01000001
[OGLL] metagenome; Human gut stool
82996
82922
-
Thr
CGT
[ENA]
¢þ
>WENV181605941
OGLL01000005
[OGLL] metagenome; Human gut stool
87107
87193
+
Leu
TAA
[ENA]
¢þ
>WENV181605938
OGLL01000002
[OGLL] metagenome; Human gut stool
95227
95301
+
Asn
GTT
[ENA]
¢þ
>WENV181605939
OGLL01000002
[OGLL] metagenome; Human gut stool
95347
95421
+
Asn
GTT
[ENA]
¢þ
>WENV181605946
OGLL01000011
[OGLL] metagenome; Human gut stool
101110
101181
+
Gln
CTG
[ENA]
¢þ
>WENV181605952
OGLL01000013
[OGLL] metagenome; Human gut stool
103883
103956
+
Phe
GAA
[ENA]
¢þ
>WENV181605942
OGLL01000005
[OGLL] metagenome; Human gut stool
106278
106350
+
Arg
CCT
[ENA]
¢þ
>WENV181605953
OGLL01000013
[OGLL] metagenome; Human gut stool
107523
107608
+
Ser
TGA
[ENA]
¢þ
>WENV181605944
OGLL01000006
[OGLL] metagenome; Human gut stool
108610
108683
+
Lys
TTT
[ENA]
¢þ
>WENV181605943
OGLL01000005
[OGLL] metagenome; Human gut stool
119445
119374
-
Gln
TTG
[ENA]
¢þ
>WENV181605940
OGLL01000002
[OGLL] metagenome; Human gut stool
140172
140246
+
Ile2
CAT
[ENA]
¢þ
>WENV181605927
OGLL01000001
[OGLL] metagenome; Human gut stool
192522
192447
-
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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