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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHBS] human gut metagenome; feces
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182015821
OHBS01000224
[OHBS] human gut metagenome; feces
99
172
+
Lys
TTT
[ENA]
¢þ
>WENV182015825
OHBS01000676
[OHBS] human gut metagenome; feces
139
56
-
Tyr
GTA
[ENA]
¢þ
>WENV182015824
OHBS01000676
[OHBS] human gut metagenome; feces
280
206
-
Thr
TGT
[ENA]
¢þ
>WENV182015822
OHBS01000458
[OHBS] human gut metagenome; feces
326
401
+
Phe
GAA
[ENA]
¢þ
>WENV182015823
OHBS01000458
[OHBS] human gut metagenome; feces
431
506
+
Gly
GCC
[ENA]
¢þ
>WENV182015820
OHBS01000060
[OHBS] human gut metagenome; feces
472
401
-
Asn
GTT
[ENA]
¢þ
>WENV182015819
OHBS01000041
[OHBS] human gut metagenome; feces
511
435
-
Ile
GAT
[ENA]
¢þ
>WENV182015818
OHBS01000041
[OHBS] human gut metagenome; feces
590
515
-
Ala
TGC
[ENA]
¢þ
>WENV182015816
OHBS01000038
[OHBS] human gut metagenome; feces
1423
1497
+
Ile
GAT
[ENA]
¢þ
>WENV182015817
OHBS01000038
[OHBS] human gut metagenome; feces
1514
1588
+
Ala
TGC
[ENA]
¢þ
>WENV182015814
OHBS01000024
[OHBS] human gut metagenome; feces
2091
2018
-
Ala
TGC
[ENA]
¢þ
>WENV182015815
OHBS01000028
[OHBS] human gut metagenome; feces
2195
2122
-
Ala
GGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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