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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OHCG] human gut metagenome; feces
HIT:
13 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182024584
OHCG01000083
[OHCG] human gut metagenome; feces
129
55
-
Asn
GTT
[ENA]
¢þ
>WENV182024583
OHCG01000047
[OHCG] human gut metagenome; feces
135
59
-
Ile
GAT
[ENA]
¢þ
>WENV182024580
OHCG01000038
[OHCG] human gut metagenome; feces
146
221
+
Ala
TGC
[ENA]
¢þ
>WENV182024588
OHCG01000255
[OHCG] human gut metagenome; feces
148
224
+
Ile
GAT
[ENA]
¢þ
>WENV182024582
OHCG01000047
[OHCG] human gut metagenome; feces
214
139
-
Ala
TGC
[ENA]
¢þ
>WENV182024589
OHCG01000255
[OHCG] human gut metagenome; feces
245
320
+
Ala
TGC
[ENA]
¢þ
>WENV182024587
OHCG01000139
[OHCG] human gut metagenome; feces
258
182
-
Pro
GGG
[ENA]
¢þ
>WENV182024581
OHCG01000047
[OHCG] human gut metagenome; feces
315
241
-
Ile
GAT
[ENA]
¢þ
>WENV182024579
OHCG01000020
[OHCG] human gut metagenome; feces
342
268
-
Ala
TGC
[ENA]
¢þ
>WENV182024585
OHCG01000139
[OHCG] human gut metagenome; feces
427
514
+
Ser
TGA
[ENA]
¢þ
>WENV182024578
OHCG01000020
[OHCG] human gut metagenome; feces
431
357
-
Ile
GAT
[ENA]
¢þ
>WENV182024586
OHCG01000139
[OHCG] human gut metagenome; feces
531
621
+
Ser
GCT
[ENA]
¢þ
>WENV182024590
OHCG01000277
[OHCG] human gut metagenome; feces
559
485
-
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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